PFRMAT SS TARGET T0141 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0141.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 58 METHOD MODEL 1 M C 0.749 L C 0.646 L C 0.471 D T 0.585 E T 0.694 G T 0.724 W T 0.432 L E 0.381 A T 0.311 E T 0.342 A T 0.321 R C 0.335 R E 0.436 V C 0.432 P C 0.544 S T 0.561 P T 0.679 H T 0.684 Y T 0.606 D T 0.435 C C 0.399 R T 0.441 P T 0.568 D T 0.612 D T 0.666 E T 0.564 N C 0.527 P C 0.521 S C 0.481 L E 0.949 L E 0.982 V E 0.988 V E 0.948 H E 0.763 N C 0.414 I C 0.404 S C 0.518 L C 0.509 P C 0.475 P H 0.571 G H 0.665 E H 0.702 F H 0.794 G H 0.777 G H 0.639 P H 0.674 W H 0.785 I H 0.908 D H 0.923 A H 0.922 L H 0.941 F H 0.941 T H 0.803 G H 0.500 T C 0.587 I C 0.542 D T 0.719 P T 0.722 N T 0.797 A T 0.783 H C 0.455 P T 0.336 Y T 0.333 F H 0.283 A T 0.276 G T 0.271 I T 0.493 A T 0.553 H T 0.607 L T 0.509 R E 0.409 V E 0.725 S E 0.818 A E 0.875 H E 0.960 C E 0.981 L E 0.983 I E 0.977 R E 0.683 R T 0.913 D T 0.964 G T 0.863 E E 0.826 I E 0.979 V E 0.974 Q E 0.980 Y E 0.898 V E 0.549 P C 0.780 F H 0.389 D G 0.476 K G 0.580 R H 0.470 A H 0.515 W H 0.458 H H 0.323 A T 0.302 G T 0.376 V T 0.395 S T 0.333 S T 0.373 Y T 0.453 Q T 0.502 G T 0.523 R T 0.515 E T 0.500 R T 0.466 C T 0.376 N C 0.333 D T 0.398 F E 0.461 S E 0.704 I E 0.766 G E 0.804 I E 0.879 E E 0.885 L E 0.810 E E 0.611 G C 0.485 T T 0.470 D T 0.561 T T 0.627 L T 0.646 A C 0.537 Y C 0.639 T C 0.889 D H 0.976 A H 0.984 Q H 0.989 Y H 0.996 Q H 0.995 Q H 0.995 L H 0.997 A H 0.999 A H 0.997 V H 0.995 T H 0.997 N H 0.992 A H 0.994 L H 0.988 I H 0.955 T H 0.901 R H 0.789 Y H 0.428 P C 0.807 A C 0.728 I C 0.645 A G 0.556 N G 0.663 N G 0.701 M C 0.303 T E 0.277 G C 0.317 H G 0.283 C G 0.379 N T 0.333 I T 0.398 A T 0.497 P T 0.475 E T 0.565 R T 0.442 K C 0.310 T C 0.385 D T 0.562 P T 0.729 G T 0.936 P T 0.935 S T 0.827 F T 0.669 D C 0.503 W H 0.857 A H 0.875 R H 0.950 F H 0.952 R H 0.952 A H 0.846 L H 0.790 V H 0.628 T C 0.621 P C 0.467 S C 0.462 S T 0.440 H T 0.468 K T 0.380 E C 0.335 M C 0.539 T C 0.947 END