PFRMAT SS TARGET T0141 AUTHOR 4069-6308-1312 METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 7 (1 EBGHSTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0141.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 58 METHOD MODEL 1 M C 0.997 L C 0.721 L C 0.579 D C 0.473 E C 0.281 G C 0.262 W C 0.415 L C 0.307 A C 0.229 E T 0.260 A C 0.265 R C 0.375 R C 0.427 V C 0.619 P C 0.624 S C 0.656 P C 0.356 H C 0.390 Y G 0.283 D C 0.335 C C 0.443 R C 0.643 P C 0.499 D T 0.465 D C 0.312 E C 0.443 N C 0.557 P C 0.801 S S 0.468 L E 0.990 L E 0.999 V E 0.999 V E 0.994 H E 0.876 N C 0.447 I C 0.428 S S 0.483 L S 0.403 P C 0.514 P H 0.490 G H 0.689 E H 0.684 F H 0.717 G H 0.684 G H 0.731 P H 0.811 W H 0.867 I H 0.923 D H 0.925 A H 0.914 L H 0.865 F H 0.717 T T 0.425 G T 0.461 T C 0.561 I C 0.667 D C 0.869 P T 0.622 N T 0.666 A G 0.245 H C 0.317 P H 0.261 Y H 0.283 F H 0.347 A H 0.307 G T 0.256 I C 0.496 A T 0.586 H T 0.619 L S 0.429 R C 0.429 V E 0.600 S E 0.784 A E 0.896 H E 0.924 C E 0.955 L E 0.971 I E 0.922 R E 0.559 R T 0.571 D T 0.841 G S 0.545 E E 0.534 I E 0.891 V E 0.960 Q E 0.961 Y E 0.957 V E 0.917 P E 0.710 F G 0.462 D G 0.456 K G 0.503 R E 0.356 A E 0.550 W E 0.718 H E 0.663 A E 0.485 G E 0.356 V C 0.281 S C 0.359 S C 0.255 Y T 0.321 Q T 0.373 G T 0.346 R C 0.363 E T 0.290 R T 0.290 C C 0.335 N C 0.444 D C 0.311 F E 0.384 S E 0.562 I E 0.646 G E 0.860 I E 0.927 E E 0.956 L E 0.900 E E 0.728 G C 0.413 T C 0.391 D T 0.428 T S 0.488 L S 0.446 A C 0.545 Y C 0.687 T C 0.860 D H 0.984 A H 0.989 Q H 0.994 Y H 0.996 Q H 0.992 Q H 0.986 L H 0.992 A H 0.994 A H 0.995 V H 0.996 T H 0.997 N H 0.996 A H 0.993 L H 0.992 I H 0.978 T H 0.901 R H 0.685 Y T 0.336 P C 0.583 A C 0.623 I C 0.886 A G 0.728 N G 0.709 N G 0.742 M C 0.339 T C 0.394 G C 0.288 H C 0.474 C C 0.293 N C 0.359 I C 0.437 A C 0.711 P T 0.306 E C 0.313 R C 0.296 K C 0.434 T C 0.333 D C 0.538 P T 0.364 G T 0.324 P T 0.494 S T 0.400 F C 0.436 D C 0.713 W H 0.893 A H 0.938 R H 0.967 F H 0.980 R H 0.959 A H 0.904 L H 0.808 V H 0.484 T T 0.402 P S 0.407 S C 0.469 S C 0.429 H C 0.406 K C 0.243 E T 0.271 M C 0.640 T C 0.984 END