PFRMAT SS
TARGET T0141
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0141.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 58
METHOD
MODEL 1
M E 0.305
L E 0.397
L B 0.255
D C 0.183
E H 0.144
G S 0.378
W B 0.305
L E 0.220
A H 0.273
E S 0.244
A E 0.160
R E 0.258
R E 0.242
V B 0.396
P B 0.289
S E 0.260
P H 0.290
H S 0.234
Y S 0.266
D E 0.186
C B 0.296
R B 0.376
P B 0.199
D H 0.250
D S 0.246
E B 0.210
N E 0.348
P A 0.432
S G 0.612
L E 0.539
L E 0.766
V E 0.696
V E 0.445
H E 0.326
N E 0.249
I E 0.222
S G 0.219
L E 0.177
P B 0.310
P H 0.289
G H 0.502
E H 0.524
F H 0.590
G H 0.523
G H 0.656
P H 0.843
W H 0.838
I H 0.810
D H 0.810
A H 0.830
L H 0.706
F S 0.394
T B 0.222
G S 0.594
T S 0.191
I B 0.472
D E 0.388
P I 0.429
N H 0.301
A S 0.246
H E 0.210
P H 0.285
Y H 0.232
F H 0.220
A H 0.287
G H 0.203
I E 0.232
A H 0.247
H S 0.245
L B 0.251
R E 0.260
V E 0.439
S E 0.525
A E 0.552
H E 0.471
C E 0.592
L E 0.553
I E 0.544
R C 0.291
R H 0.240
D B 0.453
G S 0.693
E B 0.610
I A 0.589
V E 0.247
Q E 0.495
Y A 0.398
V B 0.506
P B 0.541
F I 0.529
D I 0.360
K S 0.370
R E 0.183
A E 0.149
W B 0.206
H B 0.219
A G 0.174
G S 0.330
V E 0.206
S E 0.163
S I 0.153
Y E 0.155
Q G 0.139
G D 0.207
R E 0.140
E S 0.163
R S 0.165
C B 0.160
N E 0.255
D I 0.244
F S 0.295
S E 0.269
I E 0.469
G E 0.471
I E 0.635
E E 0.611
L E 0.426
E E 0.291
G A 0.224
T S 0.137
D S 0.195
T S 0.233
L B 0.175
A S 0.289
Y B 0.393
T B 0.575
D H 0.858
A H 0.939
Q H 0.936
Y H 0.966
Q H 0.955
Q H 0.953
L H 0.926
A H 0.957
A H 0.978
V H 0.975
T H 0.956
N H 0.961
A H 0.976
L H 0.918
I H 0.813
T H 0.765
R G 0.472
Y B 0.451
P S 0.282
A B 0.415
I B 0.487
A I 0.529
N H 0.442
N S 0.371
M A 0.222
T G 0.183
G S 0.193
H E 0.179
C I 0.297
N S 0.476
I B 0.246
A B 0.271
P I 0.186
E S 0.199
R H 0.183
K S 0.186
T B 0.207
D E 0.420
P I 0.213
G I 0.365
P I 0.355
S S 0.445
F B 0.483
D B 0.318
W H 0.627
A H 0.918
R H 0.902
F H 0.914
R H 0.828
A H 0.803
L H 0.614
V B 0.331
T S 0.379
P B 0.326
S H 0.253
S H 0.220
H H 0.184
K H 0.370
E H 0.268
M H 0.182
T B 0.239
END