PFRMAT SS TARGET T0141 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 11 (1 ABCDEFGHIST ) METHOD The input amino acid frequencies were determined from METHOD alignment T0141.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 58 METHOD MODEL 1 M E 0.305 L E 0.397 L B 0.255 D C 0.183 E H 0.144 G S 0.378 W B 0.305 L E 0.220 A H 0.273 E S 0.244 A E 0.160 R E 0.258 R E 0.242 V B 0.396 P B 0.289 S E 0.260 P H 0.290 H S 0.234 Y S 0.266 D E 0.186 C B 0.296 R B 0.376 P B 0.199 D H 0.250 D S 0.246 E B 0.210 N E 0.348 P A 0.432 S G 0.612 L E 0.539 L E 0.766 V E 0.696 V E 0.445 H E 0.326 N E 0.249 I E 0.222 S G 0.219 L E 0.177 P B 0.310 P H 0.289 G H 0.502 E H 0.524 F H 0.590 G H 0.523 G H 0.656 P H 0.843 W H 0.838 I H 0.810 D H 0.810 A H 0.830 L H 0.706 F S 0.394 T B 0.222 G S 0.594 T S 0.191 I B 0.472 D E 0.388 P I 0.429 N H 0.301 A S 0.246 H E 0.210 P H 0.285 Y H 0.232 F H 0.220 A H 0.287 G H 0.203 I E 0.232 A H 0.247 H S 0.245 L B 0.251 R E 0.260 V E 0.439 S E 0.525 A E 0.552 H E 0.471 C E 0.592 L E 0.553 I E 0.544 R C 0.291 R H 0.240 D B 0.453 G S 0.693 E B 0.610 I A 0.589 V E 0.247 Q E 0.495 Y A 0.398 V B 0.506 P B 0.541 F I 0.529 D I 0.360 K S 0.370 R E 0.183 A E 0.149 W B 0.206 H B 0.219 A G 0.174 G S 0.330 V E 0.206 S E 0.163 S I 0.153 Y E 0.155 Q G 0.139 G D 0.207 R E 0.140 E S 0.163 R S 0.165 C B 0.160 N E 0.255 D I 0.244 F S 0.295 S E 0.269 I E 0.469 G E 0.471 I E 0.635 E E 0.611 L E 0.426 E E 0.291 G A 0.224 T S 0.137 D S 0.195 T S 0.233 L B 0.175 A S 0.289 Y B 0.393 T B 0.575 D H 0.858 A H 0.939 Q H 0.936 Y H 0.966 Q H 0.955 Q H 0.953 L H 0.926 A H 0.957 A H 0.978 V H 0.975 T H 0.956 N H 0.961 A H 0.976 L H 0.918 I H 0.813 T H 0.765 R G 0.472 Y B 0.451 P S 0.282 A B 0.415 I B 0.487 A I 0.529 N H 0.442 N S 0.371 M A 0.222 T G 0.183 G S 0.193 H E 0.179 C I 0.297 N S 0.476 I B 0.246 A B 0.271 P I 0.186 E S 0.199 R H 0.183 K S 0.186 T B 0.207 D E 0.420 P I 0.213 G I 0.365 P I 0.355 S S 0.445 F B 0.483 D B 0.318 W H 0.627 A H 0.918 R H 0.902 F H 0.914 R H 0.828 A H 0.803 L H 0.614 V B 0.331 T S 0.379 P B 0.326 S H 0.253 S H 0.220 H H 0.184 K H 0.370 E H 0.268 M H 0.182 T B 0.239 END