# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lba 146 2.52e-16 1lba d.118.1.1 41062 1hfoA 113 2.84e-01 d.80.1.3 61006 1jv4A 162 3.12e-01 b.60.1.1 67343 1i05A 180 3.15e-01 1mup b.60.1.1 27130 1i06A 180 3.66e-01 1mup b.60.1.1 27131 1cr6B 554 5.69e-01 1cr6B c.108.1.2 43338 c.69.1.11 34688 1jeoA 180 6.21e-01 c.80.1.3 66611 1mup 166 6.96e-01 1mup b.60.1.1 27133 1eq9A 222 9.34e-01 5ptp b.47.1.2 26068 2mcm 112 9.59e-01 2mcm b.1.7.1 22207 1cqzA 554 1.03e+00 1cr6B c.108.1.2 43339 c.69.1.11 34689 1dbfA 127 1.07e+00 2chsA d.79.1.2 39761 2chsA 127 1.13e+00 2chsA d.79.1.2 39764 1bj7 156 1.44e+00 1bj7 b.60.1.1 27113 1bdfA 235 1.76e+00 1bdfA d.74.3.1 39727 d.181.1.1 42602 1toh 343 2.11e+00 4pah d.178.1.1 42573 1gd0A 122 3.46e+00 1dptA d.80.1.3 39834 1gm6A 175 3.74e+00 1jmuB 666 4.26e+00 1hlgA 371 4.30e+00 1hlgA c.69.1.6 34656 1f2tA 149 4.72e+00 1f2tA c.37.1.12 32373 1fezA 256 6.19e+00 1fezA c.108.1.3 43343 1c0nA 406 6.29e+00 1c0nA c.67.1.3 34433 1mfiA 114 6.64e+00 1dptA d.80.1.3 39856 1ew3A 159 7.31e+00 1mup b.60.1.1 27114 1ekeA 230 7.47e+00 1ekeA c.55.3.1 33572 1eq6A 189 7.84e+00 1eq6A d.107.1.1 40796 1cgo 127 8.27e+00 1cpq a.24.3.2 16550 1e85A 127 8.50e+00 1bbhA a.24.3.2 16549 2ctb 307 9.27e+00 1aye c.56.5.1 33803 1f83A 425 9.60e+00 1f82A d.92.1.7 40306 1wab 232 9.88e+00 1wab c.23.10.3 31341 1es9A 232 1.03e+01 1wab c.23.10.3 31340 1jnyA 435 1.03e+01 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1ifqA 138 1.06e+01 1ifqA d.110.4.1 62350 1hwyA 501 1.06e+01 1hwyA c.2.1.7 30262 c.58.1.1 33910 1maz 221 1.06e+01 1maz f.1.4.1 43393 1c4xA 285 1.07e+01 1c4xA c.69.1.10 34684 6cpa 307 1.09e+01 1aye c.56.5.1 33816 1jf9A 408 1.13e+01 1c0nA c.67.1.3 62931 1f82A 424 1.14e+01 1f82A d.92.1.7 40307 1k3bA 119 1.14e+01 2pflA 759 1.16e+01 1cm5A c.7.1.1 30675 1poc 134 1.19e+01 1poc a.133.1.1 19513 1lxa 262 1.21e+01 1lxa b.81.1.1 28052 1b6sA 355 1.24e+01 1b6rA b.84.2.1 28242 c.30.1.1 31649 d.142.1.2 41494 5pal 109 1.27e+01 1a75A a.39.1.4 17215 3pflA 759 1.34e+01 1cm5A c.7.1.1 30673 1cm5A 759 1.35e+01 1cm5A c.7.1.1 30671 1ek1A 554 1.35e+01 1cr6B c.108.1.2 43335 c.69.1.11 34685 1i50K 120 1.37e+01 d.74.3.2 61765 1epwA 1290 1.37e+01 b.29.1.6 24269 b.42.4.2 25614 d.92.1.7 40305 h.4.2.1 45785 1b6rA 355 1.37e+01 1b6rA b.84.2.1 28241 c.30.1.1 31648 d.142.1.2 41493 1shdA 107 1.44e+01 1fmk d.93.1.1 40440 1fj2A 232 1.44e+01 1auoA c.69.1.14 34720 1mh1 186 1.47e+01 1eesA c.37.1.8 32002 1f5mB 180 1.50e+01 1f5mB d.110.2.1 40896 1f5mA 180 1.50e+01 1f5mB d.110.2.1 40895 1fdyA 297 1.56e+01 1nal3 c.1.10.1 29071 1ravA 127 1.57e+01 1swuA b.61.1.1 27409 1af3 196 1.58e+01 1maz f.1.4.1 43397 1g6oA 330 1.60e+01 1g6oA c.37.1.13 32430 1b8gA 429 1.63e+01 1b8gA c.67.1.4 34499 1qf5A 431 1.70e+01 1adeA c.37.1.10 32212 1noa 113 1.71e+01 2mcm b.1.7.1 22208 1hwxA 501 1.72e+01 1hwyA c.2.1.7 30250 c.58.1.1 33898 1qu9A 128 1.86e+01 1qu9A d.79.1.1 39755 1qu9C 128 1.86e+01 1qu9A d.79.1.1 39757 3pnp 289 1.86e+01 1b8oA c.56.2.1 33763 1ijyA 130 1.86e+01 1ijxA a.141.1.1 62517 1kyqA 274 1.89e+01 1atzA 189 1.90e+01 1atzA c.62.1.1 34132 1adeA 431 1.91e+01 1adeA c.37.1.10 32213 1jkxA 212 1.96e+01 c.65.1.1 66813 1byuA 216 1.96e+01 1byuA c.37.1.8 32032 1atzB 189 1.98e+01 1atzA c.62.1.1 34133 1h2aS 317 2.01e+01 2frvA e.19.1.1 43311 2ctc 307 2.03e+01 1aye c.56.5.1 33802 2bvwA 362 2.05e+01 1bvwA c.6.1.1 30666 1auq 208 2.06e+01 1auq c.62.1.1 34137 1bvwA 360 2.07e+01 1bvwA c.6.1.1 30668 1dmhA 311 2.13e+01 1dmhA b.3.6.1 22633 1oakA 196 2.14e+01 1auq c.62.1.1 34138 1cviA 342 2.14e+01 1cviA c.60.1.2 33989 1dlyA 164 2.14e+01 1dlyA a.1.1.1 14983 1gp4A 356 2.15e+01 b.82.2.1 65439 1cauB 184 2.17e+01 1caxB b.82.1.2 28103 1qopB 396 2.17e+01 2tysB c.79.1.1 35270 1f8xA 157 2.20e+01 1f8xA c.23.14.1 31397 2tysB 397 2.21e+01 2tysB c.79.1.1 35272 1gp6A 356 2.24e+01 b.82.2.1 65441 2sli 679 2.24e+01 2sli b.29.1.9 24274 b.68.1.1 27611 4sli 679 2.24e+01 2sli b.29.1.9 24275 b.68.1.1 27612 1svq 114 2.25e+01 1svy d.109.1.1 40832 1h8aC 128 2.27e+01 a.4.1.3 65731 a.4.1.3 65732 1j9jA 247 2.27e+01 c.106.1.1 62758 1bksB 397 2.29e+01 2tysB c.79.1.1 35285 1eudB 396 2.31e+01 2scuB c.23.4.1 31150 d.142.1.4 41571 1g99A 408 2.44e+01 1g99A c.55.1.2 33457 c.55.1.2 33458 1c8bA 371 2.46e+01 1c8bA c.56.1.2 59082 1caxB 184 2.47e+01 1caxB b.82.1.2 28105 1i6lA 328 2.48e+01 c.26.1.1 66041 1gesA 450 2.53e+01 3grs c.3.1.5 30473 c.3.1.5 30474 d.87.1.1 40168 2hpaA 342 2.58e+01 1cviA c.60.1.2 33985 1tbd 134 2.59e+01 2tbd d.89.1.1 40240 1cfb 205 2.61e+01 1cfb b.1.2.1 21991 b.1.2.1 21992 3pmgA 561 2.62e+01 3pmgA c.84.1.1 35408 c.84.1.1 35409 c.84.1.1 35410 d.129.2.1 41301 2tbd 134 2.66e+01 2tbd d.89.1.1 40241 1chd 203 2.67e+01 1chd c.40.1.1 32478 1ij8A 128 2.69e+01 b.61.1.1 62480 1hp8 68 2.73e+01 1hp8 a.17.1.1 16399 1hpgA 187 2.80e+01 1qq4A b.47.1.1 25813 2aviA 128 2.86e+01 1swuA b.61.1.1 27411 1qnf 484 2.90e+01 1qnf a.99.1.1 18777 c.28.1.1 31632 2gd1O 334 2.91e+01 1dssG c.2.1.3 29978 d.81.1.1 39893 1j9lA 247 3.00e+01 c.106.1.1 62762 1qr0A 228 3.01e+01 1qr0A d.150.1.1 59038 d.150.1.1 59039 1k1gA 131 3.07e+01 d.51.1.1 68015 1fohA 664 3.13e+01 1fohA c.3.1.2 30381 c.47.1.10 33078 d.16.1.2 37900 2cavA 445 3.36e+01 1dgwA b.82.1.2 28094 b.82.1.2 28095 2wsyB 396 3.40e+01 2tysB c.79.1.1 35288 1dgrW 93 3.44e+01 1caxB 1dgrM 93 3.46e+01 1caxB b.82.1.2 28101 1fnoA 417 3.48e+01 1dwnA 127 3.50e+01 1dwnA d.85.1.1 40141 1lxtA 561 3.52e+01 3pmgA c.84.1.1 35432 c.84.1.1 35433 c.84.1.1 35434 d.129.2.1 41309 1svy 114 3.59e+01 1svy d.109.1.1 40831 1nwpA 128 3.61e+01 1nwpA b.6.1.1 23011 1cawB 184 3.63e+01 1caxB b.82.1.2 28113 1gd1O 334 3.63e+01 1dssG c.2.1.3 29962 d.81.1.1 39877 1iicA 422 3.64e+01 1nmtA d.108.1.2 62422 d.108.1.2 62423 1garA 212 3.69e+01 2gar c.65.1.1 34162 1ijbA 202 3.76e+01 1tlk 154 3.94e+01 1tlk b.1.1.4 21707 1duvG 333 3.96e+01 1othA c.78.1.1 35228 c.78.1.1 35229 1ag9A 175 3.97e+01 1rcf c.23.5.1 31178