PFRMAT SS TARGET T0140 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 11 (1 ABCDEFGHIST ) METHOD The input amino acid frequencies were determined from METHOD alignment T0140.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 341 METHOD MODEL 1 M E 0.269 R E 0.244 G E 0.314 S E 0.224 H E 0.226 H E 0.398 H E 0.227 H B 0.347 H B 0.309 H I 0.290 G H 0.280 S E 0.224 R E 0.274 L E 0.225 Q H 0.156 S S 0.156 G B 0.180 K E 0.296 M E 0.380 T A 0.193 G E 0.337 I E 0.664 V A 0.527 K E 0.408 W E 0.418 F E 0.351 N E 0.448 A A 0.201 D H 0.207 K B 0.203 G D 0.259 F S 0.182 G E 0.272 F E 0.405 I E 0.421 T E 0.488 P H 0.423 D H 0.355 D B 0.383 G S 0.434 S B 0.291 K E 0.467 D E 0.482 V E 0.386 F E 0.459 V A 0.418 H E 0.357 F E 0.284 S E 0.158 A B 0.216 G H 0.237 S B 0.250 S H 0.351 G H 0.571 A H 0.653 A H 0.627 V H 0.585 R H 0.381 G H 0.403 N S 0.261 P B 0.302 Q C 0.725 Q G 0.692 G S 0.796 D E 0.464 R A 0.500 V E 0.633 E A 0.499 G B 0.459 K B 0.561 I A 0.784 K F 0.759 S E 0.452 I E 0.326 T C 0.624 D H 0.303 F B 0.376 G T 0.348 I E 0.464 F E 0.459 I E 0.542 G E 0.519 L E 0.223 D D 0.227 G D 0.164 G S 0.423 I E 0.304 D G 0.165 G C 0.253 L E 0.401 V E 0.424 H E 0.433 L E 0.199 S H 0.362 D H 0.309 I S 0.184 S B 0.345 W H 0.275 A H 0.234 Q E 0.239 A E 0.246 E E 0.198 A B 0.186 END