PFRMAT SS
TARGET T0140
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0140.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 341
METHOD
MODEL 1
M E 0.269
R E 0.244
G E 0.314
S E 0.224
H E 0.226
H E 0.398
H E 0.227
H B 0.347
H B 0.309
H I 0.290
G H 0.280
S E 0.224
R E 0.274
L E 0.225
Q H 0.156
S S 0.156
G B 0.180
K E 0.296
M E 0.380
T A 0.193
G E 0.337
I E 0.664
V A 0.527
K E 0.408
W E 0.418
F E 0.351
N E 0.448
A A 0.201
D H 0.207
K B 0.203
G D 0.259
F S 0.182
G E 0.272
F E 0.405
I E 0.421
T E 0.488
P H 0.423
D H 0.355
D B 0.383
G S 0.434
S B 0.291
K E 0.467
D E 0.482
V E 0.386
F E 0.459
V A 0.418
H E 0.357
F E 0.284
S E 0.158
A B 0.216
G H 0.237
S B 0.250
S H 0.351
G H 0.571
A H 0.653
A H 0.627
V H 0.585
R H 0.381
G H 0.403
N S 0.261
P B 0.302
Q C 0.725
Q G 0.692
G S 0.796
D E 0.464
R A 0.500
V E 0.633
E A 0.499
G B 0.459
K B 0.561
I A 0.784
K F 0.759
S E 0.452
I E 0.326
T C 0.624
D H 0.303
F B 0.376
G T 0.348
I E 0.464
F E 0.459
I E 0.542
G E 0.519
L E 0.223
D D 0.227
G D 0.164
G S 0.423
I E 0.304
D G 0.165
G C 0.253
L E 0.401
V E 0.424
H E 0.433
L E 0.199
S H 0.362
D H 0.309
I S 0.184
S B 0.345
W H 0.275
A H 0.234
Q E 0.239
A E 0.246
E E 0.198
A B 0.186
END