Best Alignments for T0139

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here. If there are several alignments to templates that share a SCOP superfamily or FSSP representative, SAM_T02 only reports the best one.

Warning: E-values of the top models may be overly optimistic.

A2M alignment AL alignment E-value FSSP rep SCOP Domain(s)
T0139-1iuaA-2track-protein-STR-local-adpstyle5.pw.a2m.gz T0139-1iuaA-2track-protein-STR-local-adpstyle5.pw.al 8.5909e-01
T0139-1gdoA-2track-protein-STR-local-adpstyle5.pw.a2m.gz T0139-1gdoA-2track-protein-STR-local-adpstyle5.pw.al 2.0249e+00 1gdoA d.153.1.1
T0139-1jx6A-2track-protein-STR-local-adpstyle5.pw.a2m.gz T0139-1jx6A-2track-protein-STR-local-adpstyle5.pw.al 2.3665e+00 c.93.1.1
T0139-1h2rS-2track-protein-STR-local-adpstyle5.pw.a2m.gz T0139-1h2rS-2track-protein-STR-local-adpstyle5.pw.al 5.4308e+00 2frvA e.19.1.1
T0139-1ckuA-2track-protein-STR-local-adpstyle5.pw.a2m.gz T0139-1ckuA-2track-protein-STR-local-adpstyle5.pw.al 1.1532e+01 1ckuA g.35.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001