PFRMAT SS
TARGET T0139
AUTHOR 4069-6308-1312
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0139.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 3
METHOD
MODEL 1
T C 0.422
G C 0.339
I C 0.297
S C 0.330
R H 0.373
E H 0.373
T H 0.432
S H 0.566
S H 0.594
D H 0.839
V H 0.881
A H 0.881
L H 0.888
A H 0.929
S H 0.941
H H 0.931
I H 0.916
L H 0.919
T H 0.879
A H 0.786
L H 0.692
R H 0.549
E H 0.327
K C 0.373
Q C 0.407
A C 0.568
P C 0.513
E C 0.316
L C 0.336
S E 0.380
L C 0.415
S C 0.453
S H 0.226
Q C 0.256
D C 0.318
L H 0.410
E H 0.408
L H 0.381
V H 0.322
T C 0.270
K T 0.318
E C 0.253
D C 0.727
P H 0.673
K H 0.727
A H 0.812
L H 0.884
A H 0.816
V H 0.735
A H 0.660
L H 0.559
N H 0.466
W H 0.361
D C 0.321
I H 0.522
K H 0.578
K H 0.602
T H 0.746
E H 0.854
T H 0.880
V H 0.924
Q H 0.949
E H 0.932
A H 0.891
C H 0.854
E H 0.867
R H 0.904
E H 0.904
L H 0.894
A H 0.860
L H 0.831
R H 0.824
L H 0.864
Q H 0.846
Q H 0.845
T H 0.824
Q H 0.741
S H 0.687
L H 0.588
H H 0.435
S T 0.285
L C 0.623
R C 0.998
END