# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jx6A 342 1.38e-01 c.93.1.1 67406 1h2rS 267 4.46e-01 2frvA e.19.1.1 43310 1h2aS 317 5.01e-01 2frvA e.19.1.1 43311 1iuaA 83 5.18e-01 1gdoA 240 8.18e-01 1gdoA d.153.1.1 41804 1gdoB 240 8.47e-01 1gdoA d.153.1.1 41805 1cqwA 295 1.23e+00 1b6g c.69.1.8 34679 1bn7A 294 1.31e+00 1bn6A c.69.1.8 34677 1bn6A 294 1.33e+00 1bn6A c.69.1.8 34678 1bl8A 97 1.61e+00 1bl8A f.2.1.11 43652 1jm7B 117 2.31e+00 g.44.1.1 66881 1rypB 250 2.67e+00 1rypB d.153.1.4 41933 1wer 334 3.50e+00 1wer a.116.1.2 19108 1cv2A 296 3.88e+00 1bn6A c.69.1.8 34680 1qr7A 350 4.40e+00 1qr7A c.1.10.4 29191 1fjhA 257 5.34e+00 1fjhB c.2.1.2 29870 1cxzB 86 5.64e+00 1cxzB a.2.6.1 15705 1aorA 605 6.27e+00 1b25A a.110.1.1 19042 d.152.1.1 41794 1k4cC 124 6.79e+00 f.2.1.11 68130 1jplA 171 7.42e+00 a.118.9.2 67027 1iq0A 592 7.44e+00 a.27.1.1 66257 c.26.1.1 66258 d.67.2.1 66259 1fjhB 257 7.77e+00 1fjhB c.2.1.2 29871 1j95A 125 7.84e+00 1bl8A f.2.1.11 62749 1qagA 226 7.92e+00 1qagA a.40.1.1 17400 a.40.1.1 17401 1ewkA 490 8.66e+00 1ewkA c.93.1.1 35712 1bksA 268 9.23e+00 2tysA c.1.2.4 28585 1jscA 630 9.30e+00 c.31.1.3 67224 c.36.1.1 67225 c.36.1.1 67226 2tysA 268 9.53e+00 2tysA c.1.2.4 28572 1qopA 268 9.94e+00 2tysA c.1.2.4 28570 1e55A 512 1.04e+01 1e70M c.1.8.4 28934 1jb9A 316 1.05e+01 1fnc b.43.4.2 62840 c.25.1.1 62841 6cts 433 1.13e+01 1csh a.103.1.1 18891 1ckuA 85 1.20e+01 1ckuA g.35.1.1 44981 1csh 435 1.22e+01 1csh a.103.1.1 18880 1eg7A 557 1.23e+01 1eg7A c.37.1.10 32241 1d0yA 761 1.24e+01 1lvk b.34.3.1 24581 c.37.1.9 32178 1ezvF 125 1.25e+01 1be3F f.2.1.8 59550 1mjoA 104 1.25e+01 1cmbA a.43.1.2 17466 1gg1A 350 1.35e+01 1qr7A c.1.10.4 29187 1fkmA 396 1.39e+01 1fkmA a.69.2.1 18315 a.69.2.1 18316 1jli 112 1.48e+01 1jli a.26.1.2 16884 1jl5A 454 1.50e+01 c.10.2.6 66830 1kyoG 126 1.53e+01 1memA 215 1.58e+01 1cs8A d.3.1.1 37069 2wsyA 268 1.62e+01 2tysA c.1.2.4 28588 1f3vA 179 1.65e+01 1f3vA d.58.22.1 39382 1e1dA 553 1.65e+01 1e1dA e.26.1.1 43363 1g9uA 454 1.65e+01 c.10.2.6 65172 2occF 98 1.67e+01 2occF g.41.5.3 45256 1lvk 762 1.73e+01 1lvk b.34.3.1 24576 c.37.1.9 32173 1gntA 553 1.79e+01 1e2uA 553 1.82e+01 1e1dA e.26.1.1 43362 1hrq 85 1.85e+01 g.35.1.1 44984 1ois 223 1.90e+01 1a36A e.15.1.1 43267 1dmtA 696 1.96e+01 1dmtA d.92.1.4 40296 1epxA 370 2.00e+01 1fbaA c.1.10.1 29150 1btl 263 2.12e+01 1btl e.3.1.1 42691 1dsbA 189 2.21e+01 1fvkA a.44.1.1 17497 c.47.1.4 32791 1is2A 661 2.21e+01 1j4aA 333 2.25e+01 1fvkA 189 2.27e+01 1fvkA a.44.1.1 17490 c.47.1.4 32784 4ts1A 319 2.29e+01 2ts1 c.26.1.1 31565 1auk 489 2.33e+01 1auk c.76.1.2 35030 1fiqC 763 2.34e+01 1fiqC d.41.1.1 38588 d.133.1.1 41418 1pjr 724 2.35e+01 1pjr c.37.1.13 32391 c.37.1.13 32392 1cmbA 104 2.36e+01 1cmbA a.43.1.2 17460 1iioA 84 2.40e+01 a.39.4.1 66150 1kao 167 2.43e+01 1ctqA c.37.1.8 32014 1cpcA 162 2.48e+01 1cpcA a.1.1.3 15643 1mli 96 2.65e+01 1mli d.58.4.1 39070 1g6q2 328 2.66e+01 1g6q2 1egaA 301 2.74e+01 1egaA c.37.1.8 32150 d.52.3.1 38836 1sacA 204 2.75e+01 1sacA b.29.1.5 24237 1vom 762 2.84e+01 1lvk b.34.3.1 24577 c.37.1.9 32174 1fbtA 190 2.87e+01 1bif c.60.1.4 34004 1gxjA 186 2.97e+01 1cmcA 104 3.00e+01 1cmbA a.43.1.2 17462 1cmaA 104 3.02e+01 1cmbA a.43.1.2 17486 1fjgC 239 3.14e+01 1fjfC d.52.3.1 38831 d.53.1.1 38839 1dg9A 157 3.20e+01 1dg9A c.44.1.1 32637 1nal3 297 3.25e+01 1nal3 1nal1 297 3.27e+01 1nal3 1alu 186 3.38e+01 1alu a.26.1.1 16826 1k3eA 156 3.39e+01 d.198.1.1 68103 1kcfA 258 3.40e+01 a.140.2.1 68434 c.55.3.7 68435 1l7uA 263 3.52e+01 1m40A 263 3.52e+01 1k47A 337 3.57e+01 1reqB 637 3.62e+01 1reqB c.1.19.1 29621 c.23.6.1 31248 1mjhA 162 3.71e+01 1mjhA c.29.1.2 31639 1fpkA 335 3.93e+01 1frpA e.7.1.1 42930 1ermA 263 3.95e+01 1btl e.3.1.1 42690