# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d5wC 126 2.70e-02 1dbwA c.23.1.1 31101 1dbwA 126 7.97e-02 1dbwA c.23.1.1 31095 1dckA 126 8.44e-02 1dbwA c.23.1.1 31097 1bouB 302 5.97e-01 1bouB c.56.6.1 33859 1pcfA 66 9.36e-01 1pcfA d.18.1.1 38142 1d7uA 433 1.92e+00 2dkb c.67.1.4 34439 2dkb 433 2.20e+00 2dkb c.67.1.4 34438 1kwsA 261 2.38e+00 1fggA 261 2.39e+00 1fggA c.68.1.7 34576 1delA 241 2.46e+00 1dekA c.37.1.1 31844 1jjfA 268 2.60e+00 c.69.1.2 66765 1thm 279 4.43e+00 1gci c.41.1.1 32544 1hf2A 210 4.95e+00 1hf2A b.80.3.1 60992 c.102.1.1 60993 1ntr 124 7.35e+00 1dbwA c.23.1.1 31092 1dekA 241 8.50e+00 1dekA c.37.1.1 31842 1fiuA 286 9.59e+00 1fiuA c.52.1.10 33317 1af3 196 9.74e+00 1maz f.1.4.1 43397 1fgjA 546 1.10e+01 1fgjA a.138.1.3 19679 1liiA 363 1.13e+01 1fjgK 129 1.13e+01 1fjfK c.55.4.1 33733 1maz 221 1.17e+01 1maz f.1.4.1 43393 1dmlA 319 1.34e+01 1dmlA d.131.1.2 41380 d.131.1.2 41381 1ef8A 261 1.35e+01 1ef8A c.14.1.3 30921 1kgsA 225 1.36e+01 a.4.6.1 68596 c.23.1.1 68597 2pfkA 320 1.42e+01 3pfk c.89.1.1 35577 1j5eK 129 1.43e+01 1pfkA 320 1.46e+01 3pfk c.89.1.1 35575 2aaa 484 1.57e+01 7taa b.71.1.1 27777 c.1.8.1 28764 1jilA 420 1.61e+01 c.26.1.1 66745 1nif 340 1.62e+01 1nif b.6.1.3 23048 b.6.1.3 23049 1ek6A 348 1.62e+01 1xel c.2.1.2 29800 1i3kA 348 1.67e+01 1xel c.2.1.2 61595 1gklA 297 1.69e+01 c.69.1.2 65250 1gkkA 297 1.77e+01 c.69.1.2 65248 1jr3A 373 1.80e+01 a.80.1.1 63245 c.37.1.13 63246 1ermA 263 1.88e+01 1btl e.3.1.1 42690 1l7uA 263 1.88e+01 1m40A 263 1.88e+01 1foaA 348 1.90e+01 1foaA c.68.1.10 59929 1fqgA 263 1.92e+01 1btl e.3.1.1 42699 1kzhA 555 1.98e+01 1behA 187 2.02e+01 1a44 b.17.1.1 23700 1k78A 149 2.17e+01 a.4.1.5 68255 a.4.1.5 68256 1auq 208 2.19e+01 1auq c.62.1.1 34137 1pvdA 537 2.21e+01 1zpdA c.31.1.3 31737 c.36.1.1 31777 c.36.1.1 31778 4pgaA 337 2.23e+01 4pgaA c.88.1.1 35565 1iufA 144 2.24e+01 1fo8A 343 2.25e+01 1foaA c.68.1.10 59927 1btl 263 2.29e+01 1btl e.3.1.1 42691 1gzcA 239 2.34e+01 1d3yA 301 2.43e+01 1d3yA e.12.1.1 43252 1gt91 357 2.43e+01 3pga1 337 2.45e+01 4pgaA 1ekeA 230 2.55e+01 1ekeA c.55.3.1 33572 1a44 185 2.56e+01 1a44 b.17.1.1 23704 1ijbA 202 2.61e+01 1oakA 196 2.63e+01 1auq c.62.1.1 34138 1ewkA 490 2.65e+01 1ewkA c.93.1.1 35712 1ax0 239 2.66e+01 1led b.29.1.1 24042 1iirA 415 2.70e+01 1iirA c.87.1.5 62453 1qh8B 519 2.71e+01 1qguB c.92.2.3 35634 1qguB 519 2.72e+01 1qguB c.92.2.3 35626 1d2kA 392 2.75e+01 1d2kA c.1.8.5 29008 d.26.3.1 38442 1pjr 724 3.03e+01 1pjr c.37.1.13 32391 c.37.1.13 32392 1kezA 300 3.06e+01 c.69.1.22 68546 1ble 163 3.06e+01 1ble c.38.1.1 32475 1c0pA 363 3.09e+01 1an9A c.4.1.2 30647 d.16.1.3 37934 6pfkA 319 3.22e+01 3pfk c.89.1.1 35583 1e2kA 331 3.27e+01 1qhiA c.37.1.1 31854 1gp2G 71 3.35e+01 1tbgE a.137.3.1 19635 1jztA 246 3.37e+01 c.104.1.1 63319 1k0mA 241 3.40e+01 a.45.1.1 67949 c.47.1.5 67950 1jscA 630 3.70e+01 c.31.1.3 67224 c.36.1.1 67225 c.36.1.1 67226 1dbqA 289 3.74e+01 1qpzA c.93.1.1 35666 1k0nA 241 3.77e+01 a.45.1.1 67953 c.47.1.5 67954 1pne 140 3.90e+01 1pne d.110.1.1 40866