# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lid 131 3.14e-23 1hmt b.60.1.2 27184 1hmt 132 3.86e-23 1hmt b.60.1.2 27169 1bwyA 132 4.18e-23 1hmt b.60.1.2 27172 1hms 132 4.23e-23 1hmt b.60.1.2 27168 1crb 134 8.88e-22 1hmt b.60.1.2 27220 1opbA 135 3.99e-21 1hmt b.60.1.2 27216 1opaA 135 4.07e-21 1hmt b.60.1.2 27214 1cbs 137 9.79e-21 1hmt b.60.1.2 27201 1ifc 132 2.56e-19 b.60.1.2 27173 1ftpA 133 3.94e-19 1hmt b.60.1.2 27199 1lfo 128 9.07e-18 1hmt b.60.1.2 27223 1eal 127 1.98e-16 1hmt b.60.1.2 27227 1mdc 133 4.01e-15 1hmt b.60.1.2 27198 1fvuB 125 2.57e+00 1ixxB d.169.1.1 42346 1ge8A 249 2.68e+00 1plq d.131.1.2 41398 d.131.1.2 41399 1f3uA 118 3.49e+00 1f3uA b.65.1.1 27521 1hnf 182 5.10e+00 1qa9A b.1.1.1 19741 b.1.1.3 21680 1plq 258 5.31e+00 1plq d.131.1.2 41388 d.131.1.2 41389 1copD 66 5.93e+00 1orc a.35.1.2 17058 1eqnA 321 6.46e+00 1dd9A e.13.1.1 43256 1at0 145 6.56e+00 1at0 b.86.1.1 28374 1eagA 342 6.91e+00 1eagA b.50.1.2 26826 1a9xB 379 7.67e+00 1c3oB c.8.3.1 30732 c.23.16.1 31409 1rmg 422 8.51e+00 1rmg b.80.1.3 28029 1ddeA 338 8.68e+00 1dd9A e.13.1.1 43255 1dd9A 338 9.07e+00 1dd9A e.13.1.1 43254 1hd8A 363 9.19e+00 b.105.1.1 65803 e.3.1.1 65804 1g5gB 481 9.52e+00 f.12.1.1 65157 h.3.2.1 65158 1c3oB 382 9.99e+00 1c3oB c.8.3.1 30744 c.23.16.1 31421 1cs0B 382 1.04e+01 1c3oB c.8.3.1 30740 c.23.16.1 31417 1jssA 224 1.16e+01 1fyeA 229 1.30e+01 1fyeA c.23.16.4 31477 1gmiA 136 1.32e+01 b.7.1.1 65309 1jk3A 158 1.42e+01 d.92.1.11 66790 1d2sA 170 1.61e+01 1d2sA b.29.1.4 24221 1pvxA 194 1.68e+01 1axkA b.29.1.11 24341 1e01A 48 1.72e+01 1e01A d.7.1.1 37326 1ieaA 192 1.80e+01 1iakA b.1.1.2 21631 d.19.1.1 38205 1plr 258 1.81e+01 1plq d.131.1.2 41390 d.131.1.2 41391 1iw2A 182 1.83e+01 1qfhA 212 1.98e+01 1qfhA b.1.1.5 21893 b.1.1.5 21894 1yna 194 2.20e+01 1axkA b.29.1.11 24335 1g6gA 127 2.25e+01 1g6gA b.26.1.2 23916 1ijhA 504 2.32e+01 c.3.1.2 66161 d.16.1.1 66162 1c8pA 102 2.47e+01 1c8pA b.1.2.1 22040 1f7lA 121 2.48e+01 1f7lA d.150.1.2 59666 1dyoA 160 2.51e+01 1dyoA b.18.1.7 23771 1bc8C 93 2.54e+01 1awcA a.4.5.21 16168 1j5pA 253 2.57e+01 2minA 491 2.66e+01 1qguA c.92.2.3 35609 1ddf 127 2.76e+01 1ddf a.77.1.1 18423 1efvB 255 2.87e+01 1efvB c.29.1.1 31634 1qu0A 191 2.92e+01 1dykA b.29.1.4 24225 1xyn 178 2.95e+01 1axkA b.29.1.11 24322 2hhmA 276 2.96e+01 1imbA e.7.1.1 42955 3minC 491 2.96e+01 1qguA c.92.2.3 35607 1imdA 277 2.99e+01 1imbA e.7.1.1 42968 1al0G 175 3.04e+01 2bpa2 b.10.1.1 23275 1ku2A 241 3.04e+01 1ej0A 180 3.15e+01 1ej0A c.66.1.2 34179 1mlbA 214 3.17e+01 8fabA b.1.1.1 20050 b.1.1.2 21092 1tetL 216 3.19e+01 32c2A b.1.1.1 19902 b.1.1.2 20996 1b4vA 504 3.23e+01 1b8sA c.3.1.2 30334 d.16.1.1 37865 1fiwA 290 3.26e+01 5ptp 1kwaB 88 3.28e+01 1kwaA b.36.1.1 24773 1b8sA 504 3.28e+01 1b8sA c.3.1.2 30335 d.16.1.1 37866 1poiA 317 3.32e+01 1poiA c.63.1.1 34153 1l1dA 152 3.33e+01 1xypA 190 3.39e+01 1axkA b.29.1.11 24327 1lf7A 182 3.41e+01 1h80A 464 3.49e+01 b.80.1.8 65714 1jchC 551 3.55e+01 b.101.1.1 66495 b.110.1.1 66496 h.4.9.1 66497 1jbgA 109 3.62e+01 a.6.1.3 66480 1dqqA 214 3.66e+01 8fabA b.1.1.1 20420 b.1.1.2 21390 1imbA 277 3.68e+01 1imbA e.7.1.1 42957 1augA 215 3.71e+01 1a2zA c.56.4.1 33798 1ee8A 266 3.76e+01 1ee8A e.14.1.1 43261 1qfmA 710 3.80e+01 1qfmA b.69.7.1 27673 c.69.1.4 34641 1bf8 205 3.85e+01 1qpxA b.1.11.1 22332 b.7.2.1 23214 1b77A 228 3.96e+01 1b77A d.131.1.2 41362 d.131.1.2 41363 1fltY 95 3.98e+01 1fltX b.1.1.4 21766 1h6yA 170 3.99e+01 1am2 199 4.00e+01 1am2 b.86.1.2 28381