# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lid 131 6.54e-26 1hmt b.60.1.2 27184 1hms 132 7.72e-26 1hmt b.60.1.2 27168 1hmt 132 9.87e-26 1hmt b.60.1.2 27169 1bwyA 132 1.05e-24 1hmt b.60.1.2 27172 1crb 134 3.90e-24 1hmt b.60.1.2 27220 1opbA 135 1.51e-23 1hmt b.60.1.2 27216 1opaA 135 2.99e-23 1hmt b.60.1.2 27214 1cbs 137 4.61e-23 1hmt b.60.1.2 27201 1ifc 132 1.20e-21 b.60.1.2 27173 1ftpA 133 2.75e-21 1hmt b.60.1.2 27199 1lfo 128 2.94e-20 1hmt b.60.1.2 27223 1eal 127 7.81e-18 1hmt b.60.1.2 27227 1mdc 133 3.32e-17 1hmt b.60.1.2 27198 1ge8A 249 2.15e-01 1plq d.131.1.2 41398 d.131.1.2 41399 1plq 258 6.44e-01 1plq d.131.1.2 41388 d.131.1.2 41389 1rmg 422 1.27e+00 1rmg b.80.1.3 28029 1at0 145 2.12e+00 1at0 b.86.1.1 28374 1plr 258 2.18e+00 1plq d.131.1.2 41390 d.131.1.2 41391 1fvuB 125 3.97e+00 1ixxB d.169.1.1 42346 1f3uA 118 4.16e+00 1f3uA b.65.1.1 27521 1c3oB 382 4.40e+00 1c3oB c.8.3.1 30744 c.23.16.1 31421 1copD 66 4.80e+00 1orc a.35.1.2 17058 1am2 199 5.08e+00 1am2 b.86.1.2 28381 1fyeA 229 6.22e+00 1fyeA c.23.16.4 31477 1difA 99 6.26e+00 1fmb b.50.1.1 26503 1eqnA 321 6.32e+00 1dd9A e.13.1.1 43256 1a9xB 379 7.43e+00 1c3oB c.8.3.1 30732 c.23.16.1 31409 1noa 113 7.54e+00 2mcm b.1.7.1 22208 1ddf 127 7.94e+00 1ddf a.77.1.1 18423 1eagA 342 8.00e+00 1eagA b.50.1.2 26826 1ichA 112 9.26e+00 1e01A 48 9.38e+00 1e01A d.7.1.1 37326 1k1tA 99 1.08e+01 1ijhA 504 1.10e+01 c.3.1.2 66161 d.16.1.1 66162 1dazC 99 1.15e+01 1hvc b.50.1.1 26501 1hvc 203 1.18e+01 1hvc b.50.1.1 26614 1b4vA 504 1.28e+01 1b8sA c.3.1.2 30334 d.16.1.1 37865 1b8sA 504 1.31e+01 1b8sA c.3.1.2 30335 d.16.1.1 37866 1efcA 393 1.31e+01 1efcA b.43.3.1 25680 b.44.1.1 25720 c.37.1.8 32113 1c9uA 454 1.34e+01 1c9uA b.68.2.1 27623 1xypA 190 1.37e+01 1axkA b.29.1.11 24327 2cgpA 210 1.38e+01 2cgpA a.4.5.4 16102 b.82.3.2 28141 2hrvA 142 1.40e+01 2hrvA b.47.1.4 26429 1h80A 464 1.40e+01 b.80.1.8 65714 1hyxH 224 1.43e+01 1igtB b.1.1.1 20167 b.1.1.2 21191 1ieaA 192 1.45e+01 1iakA b.1.1.2 21631 d.19.1.1 38205 1aisB 200 1.57e+01 1aisB a.74.1.2 18384 a.74.1.2 18385 1qfhA 212 1.61e+01 1qfhA b.1.1.5 21893 b.1.1.5 21894 1jguH 217 1.62e+01 b.1.1.1 66688 b.1.1.2 66689 2hhmA 276 1.65e+01 1imbA e.7.1.1 42955 1qbiA 454 1.66e+01 1c9uA b.68.2.1 27619 1efvB 255 1.68e+01 1efvB c.29.1.1 31634 1jbgA 109 1.68e+01 a.6.1.3 66480 1qfmA 710 1.73e+01 1qfmA b.69.7.1 27673 c.69.1.4 34641 5hvpA 99 1.75e+01 1fmb b.50.1.1 26605 1hnf 182 1.83e+01 1qa9A b.1.1.1 19741 b.1.1.3 21680 1f7lA 121 1.89e+01 1f7lA d.150.1.2 59666 1pta 318 1.90e+01 1pscA c.1.9.3 29064 1ej0A 180 1.95e+01 1ej0A c.66.1.2 34179 1acx 108 1.98e+01 2mcm b.1.7.1 22211 1g6gA 127 2.07e+01 1g6gA b.26.1.2 23916 1mun 225 2.09e+01 1mun a.96.1.2 18744 1muyA 225 2.10e+01 1mun a.96.1.2 18745 1qfcA 306 2.10e+01 1uteA d.159.1.1 42077 1ucyE 109 2.16e+01 1ucyE 1eywA 331 2.20e+01 1pscA c.1.9.3 29057 1pvxA 194 2.22e+01 1axkA b.29.1.11 24341 1hzyA 332 2.23e+01 1pscA c.1.9.3 61468 1i0dA 332 2.23e+01 1pscA c.1.9.3 61487 1cruA 454 2.23e+01 1c9uA b.68.2.1 27617 1hw5A 210 2.27e+01 2cgpA a.4.5.4 16098 b.82.3.2 28137 1imdA 277 2.31e+01 1imbA e.7.1.1 42968 1yrnA 61 2.33e+01 1akhA a.4.1.1 15981 1ftrA 296 2.34e+01 1ftrA d.58.33.1 39485 d.58.33.1 39486 1fltX 95 2.35e+01 1fltX b.1.1.4 21765 1bqhG 129 2.41e+01 1cd8 b.1.1.1 19715 1jjgA 102 2.48e+01 1cs0B 382 2.49e+01 1c3oB c.8.3.1 30740 c.23.16.1 31417 1kzkA 99 2.56e+01 1dqeA 137 2.61e+01 1dqeA a.39.2.1 17388 1bco 327 2.67e+01 1bco b.48.1.1 26431 c.55.3.3 33676 1tgoA 773 2.69e+01 1tgoA c.55.3.5 33721 e.8.1.1 43010 1j5pA 253 2.71e+01 1gxrA 337 2.88e+01 1fltY 95 2.89e+01 1fltX b.1.1.4 21766 1pscA 365 2.92e+01 1pscA c.1.9.3 29058 1xyn 178 2.98e+01 1axkA b.29.1.11 24322 1kxqE 120 3.00e+01 2eifA 136 3.01e+01 1bkb b.34.5.2 24607 b.40.4.5 25339 1cvsC 225 3.05e+01 1cvsC b.1.1.4 21726 b.1.1.4 21727 1hd8A 363 3.10e+01 b.105.1.1 65803 e.3.1.1 65804 1qexA 288 3.12e+01 1qexA b.32.1.1 24425 1b5l 172 3.16e+01 1b5l a.26.1.3 16900 1yna 194 3.18e+01 1axkA b.29.1.11 24335 1jo8A 58 3.19e+01 1lckA 175 3.21e+01 1lckA b.34.2.1 24552 d.93.1.1 40421 1hae 63 3.21e+01 1xdtR g.3.11.1 44298 1kcvL 214 3.22e+01 1jk3A 158 3.31e+01 d.92.1.11 66790 1augA 215 3.56e+01 1a2zA c.56.4.1 33798 1qr7A 350 3.59e+01 1qr7A c.1.10.4 29191 1forL 210 3.61e+01 8fabA b.1.1.1 19988 b.1.1.2 21044 1idrA 136 3.61e+01 1dlyA a.1.1.1 62301 1imbA 277 3.63e+01 1imbA e.7.1.1 42957 1hgeA 328 3.64e+01 1hgeA b.19.1.2 23816 1h6uA 308 3.69e+01 b.1.1.6 65688 c.10.2.1 65689 1uxc 65 3.71e+01 1uxc a.35.1.5 17119 1b77A 228 3.74e+01 1b77A d.131.1.2 41362 d.131.1.2 41363 1gg1A 350 3.82e+01 1qr7A c.1.10.4 29187 3hmgA 328 3.83e+01 1hgeA b.19.1.2 23825 1d2sA 170 3.97e+01 1d2sA b.29.1.4 24221 1a79A 171 3.99e+01 1a79A c.52.2.1 33340 d.75.1.1 39739