PFRMAT SS TARGET T0136 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0136.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 253 METHOD MODEL 1 L C 0.710 L C 0.509 S C 0.440 F C 0.333 L C 0.422 P T 0.402 Q T 0.464 N T 0.487 N T 0.506 T T 0.447 E C 0.451 E C 0.394 A H 0.440 S H 0.556 F H 0.640 V H 0.540 N H 0.644 P H 0.701 N H 0.632 N H 0.527 D H 0.416 V H 0.438 S H 0.378 P C 0.329 N C 0.366 T T 0.350 E H 0.391 L H 0.390 R H 0.356 D H 0.342 I H 0.303 V C 0.339 P C 0.371 I C 0.443 D T 0.421 G T 0.566 K T 0.564 K T 0.517 G C 0.586 Y C 0.750 D C 0.863 V H 0.958 R H 0.976 D H 0.969 V H 0.981 I H 0.974 A H 0.941 K H 0.922 I H 0.822 V C 0.359 D T 0.674 W T 0.771 G T 0.743 D E 0.443 Y E 0.682 L E 0.743 E E 0.813 V E 0.590 K E 0.430 A T 0.332 G T 0.461 Y T 0.531 A T 0.807 T T 0.851 N T 0.754 L E 0.746 V E 0.949 T E 0.972 A E 0.981 F E 0.978 A E 0.971 R E 0.966 V E 0.898 N T 0.759 G T 0.839 R E 0.624 S E 0.905 V E 0.968 G E 0.995 I E 0.995 V E 0.988 A E 0.949 N E 0.560 Q T 0.714 P T 0.805 S T 0.684 V T 0.488 M E 0.321 S E 0.309 G T 0.371 C C 0.390 L C 0.541 D C 0.714 I H 0.677 N H 0.871 A H 0.959 S H 0.986 D H 0.995 K H 0.994 A H 0.996 A H 0.998 E H 0.999 F H 0.999 V H 0.997 N H 0.996 F H 0.993 C H 0.986 D H 0.962 S H 0.869 F H 0.647 N C 0.897 I C 0.870 P C 0.820 L E 0.943 V E 0.990 Q E 0.992 L E 0.975 V E 0.893 D E 0.413 V T 0.642 P T 0.670 G T 0.679 F T 0.436 L C 0.435 P C 0.449 G C 0.387 V H 0.688 Q H 0.779 Q H 0.786 E H 0.797 Y H 0.844 G H 0.857 G H 0.839 I H 0.951 I H 0.977 R H 0.987 H H 0.988 G H 0.994 A H 0.995 K H 0.988 M H 0.982 L H 0.978 Y H 0.950 A H 0.953 Y H 0.934 S H 0.876 E H 0.543 A C 0.544 T C 0.800 V C 0.628 P C 0.693 K E 0.919 I E 0.987 T E 0.991 V E 0.991 V E 0.963 L E 0.847 R E 0.396 K T 0.631 A T 0.757 Y T 0.717 G T 0.464 G T 0.409 S T 0.313 Y E 0.344 L H 0.244 A H 0.275 M H 0.346 C H 0.285 N T 0.307 R T 0.349 D T 0.474 L T 0.508 G T 0.506 A T 0.552 D T 0.382 A E 0.861 V E 0.934 Y E 0.970 A E 0.939 W E 0.592 P T 0.886 S T 0.921 A T 0.684 E E 0.711 I E 0.964 A E 0.968 V E 0.953 M E 0.740 G C 0.592 A H 0.834 E H 0.866 G H 0.950 A H 0.948 A H 0.945 N H 0.917 V H 0.870 I H 0.800 F H 0.510 R H 0.452 K H 0.383 E H 0.518 I H 0.532 K H 0.571 A H 0.528 A H 0.604 D H 0.729 D H 0.751 P H 0.828 D H 0.812 A H 0.834 M H 0.800 R H 0.796 A H 0.853 E H 0.832 K H 0.735 I H 0.843 E H 0.849 E H 0.818 Y H 0.767 Q H 0.727 N H 0.645 A H 0.540 F C 0.401 N C 0.605 T C 0.808 P H 0.863 Y H 0.897 V H 0.912 A H 0.918 A H 0.939 A H 0.947 R H 0.836 G C 0.773 Q C 0.666 V C 0.397 D T 0.410 D T 0.352 V T 0.389 I C 0.332 D C 0.665 P H 0.629 A H 0.690 D H 0.794 T H 0.948 R H 0.996 R H 0.997 K H 0.997 I H 0.998 A H 0.998 S H 0.994 A H 0.990 L H 0.988 E H 0.964 M H 0.935 Y H 0.912 A H 0.912 T H 0.467 K C 0.392 R H 0.454 Q H 0.468 T C 0.379 R C 0.493 P C 0.465 A C 0.385 K T 0.321 K C 0.346 H T 0.361 G T 0.397 N T 0.442 F C 0.455 P C 0.702 C C 0.960 END