% (null) % (c) 1992-2001 Regents of the University of California, Santa Cruz % % Sequence Alignment and Modeling Software System % http://www.cse.ucsc.edu/research/compbio/sam.html % % ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- % R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: % Extension and analysis of the basic method, CABIOS 12:95-107, 1996. % K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting % remote protein homologies, Bioinformatics 14(10):846-856, 1998. % A. Krogh et al., Hidden Markov models in computational biology: % Applications to protein modeling, JMB 235:1501-1531, Feb 1994. % --------------------------------------------------------------------- % T0136.t2k Host: cc77 Fri Aug 16 00:24:03 2002 % karplus Dir: /projects/compbio/experiments/casp5/t0136/t0136-1-80 % --------------------------------------------------------------------- % Sequence-model (global) (SW = 0) % Track 0 Coeff 1.000 File T0136.t2k-w0.5.mod % Track 1 Coeff 0.300 File T0136.t2k.str.mod 1i49A.1.1 224 -99.44 -99.44 1i4dA.1.1 224 -99.41 -99.41 1i4lA.1.1 224 -99.35 -99.35 1bct.1.1 69 -98.24 -98.24 1a92A.1.0 50 -96.09 -96.09 1i4lA.1.0 224 -95.30 -95.30 1bct.2.2 69 -105.94 -105.94 1eerA.2.2 166 -99.75 -99.75 1a92A.2.2 50 -98.02 -98.02 1i49A.2.2 224 -96.82 -96.82 1i4dA.2.2 224 -96.82 -96.82 1i4lA.2.2 224 -96.58 -96.58 1bct.3.3 69 -104.12 -104.12 1eerA.3.3 166 -98.26 -98.26 1a92A.3.3 50 -98.09 -98.09 1i49A.3.3 224 -97.48 -97.48 1i4dA.3.3 224 -97.44 -97.44 1i4lA.3.3 224 -97.24 -97.24 1bct.4.4 69 -101.88 -101.88 1i49A.4.4 224 -98.75 -98.75 1i4dA.4.4 224 -98.66 -98.66 1i4lA.4.4 224 -98.51 -98.51 1a92A.4.4 50 -98.30 -98.30 1bct.4.6 69 -97.21 -97.21 1bct.5.5 69 -101.92 -101.92 1i49A.5.5 224 -99.57 -99.57 1i4dA.5.5 224 -99.42 -99.42 1i4lA.5.5 224 -99.33 -99.33 1a92A.5.5 50 -98.04 -98.04 1bct.5.7 69 -97.01 -97.01 1bct.6.6 69 -102.24 -102.24 1i49A.6.6 224 -100.26 -100.26 1i4dA.6.6 224 -100.11 -100.11 1i4lA.6.6 224 -100.02 -100.02 1a92A.6.6 50 -97.52 -97.52 1hwxA.6.6 501 -97.50 -97.50 1bct.7.7 69 -103.87 -103.87 1i49A.7.7 224 -101.17 -101.17 1i4dA.7.7 224 -101.00 -101.00 1i4lA.7.7 224 -100.92 -100.92 1gc5A.7.7 467 -98.21 -98.21 1hwxA.7.7 501 -98.14 -98.14 1bct.8.8 69 -105.78 -105.78 1i49A.8.8 224 -101.70 -101.70 1i4dA.8.8 224 -101.53 -101.53 1i4lA.8.8 224 -101.47 -101.47 1gc5A.8.8 467 -100.78 -100.78 1foeA.8.8 377 -99.12 -99.12 1bct.9.9 69 -107.60 -107.60 1i49A.9.9 224 -103.45 -103.45 1i4dA.9.9 224 -103.25 -103.25 1i4lA.9.9 224 -103.24 -103.24 1gc5A.9.9 467 -103.00 -103.00 1foeA.9.9 377 -101.78 -101.78 1bct.10.10 69 -110.24 -110.24 1gc5A.10.10 467 -105.46 -105.46 1i49A.10.10 224 -105.07 -105.07 1i4lA.10.10 224 -104.88 -104.88 1i4dA.10.10 224 -104.85 -104.85 1foeA.10.10 377 -104.03 -104.03 1bct.11.11 69 -111.63 -111.63 1jw2A.11.15 72 -108.61 -108.61 1gc5A.11.11 467 -107.32 -107.32 1i49A.11.11 224 -107.24 -107.24 1i4lA.11.11 224 -107.06 -107.06 1i4dA.11.11 224 -106.97 -106.97 1jw2A.12.16 72 -116.83 -116.83 1bct.12.12 69 -114.35 -114.35 1i49A.12.12 224 -109.27 -109.27 1i4lA.12.12 224 -109.13 -109.13 1i4dA.12.12 224 -108.97 -108.97 1foeA.12.12 377 -108.73 -108.73 1jw2A.13.17 72 -125.73 -125.73 1bct.13.13 69 -116.12 -116.12 1foeA.13.13 377 -109.71 -109.71 1i49A.13.13 224 -109.49 -109.49 1i4lA.13.13 224 -109.36 -109.36 1i4dA.13.13 224 -109.16 -109.16 1jw2A.14.18 72 -133.00 -133.00 1bct.14.14 69 -117.78 -117.78 1a1z.14.14 91 -112.57 -112.57 1phnB.14.18 172 -111.48 -111.48 1foeA.14.14 377 -110.64 -110.64 1i49A.14.14 224 -109.96 -109.96 1jw2A.15.19 72 -134.68 -134.68 1bct.15.15 69 -119.17 -119.17 1phnB.15.19 172 -114.96 -114.96 1a1z.15.15 91 -114.15 -114.15 1jobA.15.19 162 -110.72 -110.72 1ktpB.15.19 172 -110.12 -110.12 1jw2A.16.20 72 -136.79 -136.79 1bct.16.16 69 -120.28 -120.28 1phnB.16.20 172 -117.85 -117.85 1a1z.16.16 91 -117.70 -117.70 1ktpB.16.20 172 -113.13 -113.13 1rypF.16.17 233 -112.56 -112.56 1jw2A.17.21 72 -135.89 -135.89 1bct.17.17 69 -121.52 -121.52 1phnB.17.21 172 -119.10 -119.10 1a1z.17.17 91 -118.73 -118.73 1dcnA.17.21 424 -117.89 -117.89 2tct.17.21 207 -115.81 -115.81 1jw2A.18.22 72 -135.74 -135.74 1dcnA.18.22 424 -130.12 -130.12 1bct.18.18 69 -121.96 -121.96 2tct.18.22 207 -119.98 -119.98 1phnB.18.22 172 -119.62 -119.62 1a1z.18.18 91 -118.40 -118.40 1dcnA.19.23 424 -139.90 -139.90 1jw2A.19.23 72 -136.74 -136.74 1bct.19.19 69 -123.42 -123.42 2tct.19.23 207 -122.15 -122.15 1phnB.19.23 172 -120.52 -120.52 1rypF.19.20 233 -118.62 -118.62 1dcnA.20.24 424 -145.99 -145.99 1jw2A.20.24 72 -136.83 -136.83 1bct.20.20 69 -125.50 -125.50 2tct.20.24 207 -123.38 -123.38 1b4aA.20.25 149 -120.99 -120.99 1rypF.20.21 233 -120.12 -120.12 1dcnA.21.25 424 -151.10 -151.10 1jw2A.21.25 72 -137.23 -137.23 1bct.21.21 69 -127.98 -127.98 2tct.21.25 207 -125.59 -125.59 1rypF.21.22 233 -123.28 -123.28 1a1z.21.21 91 -121.62 -121.62 1dcnA.22.26 424 -154.23 -154.23 1jw2A.22.26 72 -138.02 -138.02 1bct.22.22 69 -131.99 -131.99 2tct.22.26 207 -129.33 -129.33 1rypF.22.23 233 -126.01 -126.01 1a1z.22.22 91 -123.50 -123.50 1dcnA.23.27 424 -157.45 -157.45 1jw2A.23.27 72 -139.82 -139.82 1bct.23.23 69 -133.43 -133.43 2tct.23.27 207 -131.32 -131.32 1e68A.23.27 70 -128.57 -128.57 1rypF.23.24 233 -127.05 -127.05 1dcnA.24.28 424 -159.48 -159.48 1jw2A.24.28 72 -137.68 -137.68 1bct.24.24 69 -131.75 -131.75 1e68A.24.28 70 -130.88 -130.88 2tct.24.28 207 -129.15 -129.15 2tct.24.27 207 -127.15 -127.15 1dcnA.25.29 424 -161.03 -161.03 1jw2A.25.29 72 -135.15 -135.15 1e68A.25.29 70 -133.36 -133.36 2tct.25.29 207 -128.06 -128.06 2tct.25.28 207 -127.61 -127.61 1a1z.25.25 91 -127.41 -127.41 1dcnA.26.30 424 -164.33 -164.33 1e68A.26.30 70 -135.61 -135.61 1jw2A.26.30 72 -133.25 -133.25 2tct.26.29 207 -127.99 -127.99 2tct.26.30 207 -127.28 -127.28 1a1z.26.26 91 -126.41 -126.41 1dcnA.27.31 424 -169.88 -169.88 1e68A.27.31 70 -137.20 -137.20 1jw2A.27.31 72 -132.35 -132.35 2tct.27.30 207 -128.61 -128.61 2tct.27.31 207 -128.13 -128.13 1a91.27.27 79 -128.02 -128.02 1dcnA.28.32 424 -176.77 -176.77 1e68A.28.32 70 -141.36 -141.36 1k6dA.28.28 220 -133.92 -133.92 1jw2A.28.32 72 -132.11 -132.11 1a91.28.28 79 -130.66 -130.66 2tct.28.32 207 -129.80 -129.80 1dcnA.29.33 424 -177.71 -177.71 1e68A.29.33 70 -143.00 -143.00 1k6dA.29.29 220 -135.80 -135.80 1a91.29.29 79 -132.37 -132.37 2tct.29.33 207 -131.23 -131.23 1jw2A.29.33 72 -131.00 -131.00 1dcnA.30.34 424 -175.21 -175.21 1e68A.30.34 70 -139.38 -139.38 1k6dA.30.30 220 -136.73 -136.73 1a91.30.30 79 -133.05 -133.05 1cy5A.30.32 97 -130.77 -130.77 1jw2A.30.34 72 -129.08 -129.08 1dcnA.31.35 424 -174.78 -174.78 1k6dA.31.31 220 -137.40 -137.40 1a91.31.31 79 -134.77 -134.77 1e68A.31.35 70 -134.74 -134.74 1cy5A.31.33 97 -131.96 -131.96 3pviA.31.35 157 -131.21 -131.21 1dcnA.32.36 424 -176.92 -176.92 1k6dA.32.32 220 -136.12 -136.12 1a91.32.32 79 -135.69 -135.69 1e68A.32.36 70 -132.92 -132.92 1foeA.32.33 377 -132.46 -132.46 1cy5A.32.34 97 -131.27 -131.27 1dcnA.33.37 424 -179.50 -179.50 1a91.33.33 79 -138.99 -138.99 1k6dA.33.33 220 -136.99 -136.99 1foeA.33.34 377 -135.88 -135.88 1e68A.33.37 70 -133.69 -133.69 1cy5A.33.35 97 -133.15 -133.15 1dcnA.34.38 424 -187.75 -187.75 1a91.34.34 79 -145.47 -145.47 1k6dA.34.34 220 -142.60 -142.60 1foeA.34.35 377 -141.27 -141.27 1e68A.34.38 70 -138.54 -138.54 1cy5A.34.36 97 -138.51 -138.51 1dcnA.35.39 424 -188.83 -188.83 1a91.35.35 79 -150.87 -150.87 1k6dA.35.35 220 -146.69 -146.69 1e68A.35.39 70 -144.01 -144.01 1foeA.35.36 377 -143.68 -143.68 1psrA.35.42 100 -143.05 -143.05 1dcnA.36.40 424 -190.67 -190.67 1a91.36.36 79 -152.88 -152.88 1foeA.36.37 377 -148.68 -148.68 1k6dA.36.36 220 -146.88 -146.88 1psrA.36.43 100 -146.77 -146.77 1kxu.36.41 333 -145.97 -145.97 1dcnA.37.41 424 -185.84 -185.84 1foeA.37.38 377 -151.56 -151.56 1a91.37.37 79 -150.60 -150.60 1kxu.37.42 333 -148.55 -148.55 1bc5A.37.41 269 -148.24 -148.24 1psrA.37.44 100 -146.47 -146.47 1dcnA.38.42 424 -180.25 -180.25 1foeA.38.39 377 -152.89 -152.89 1bc5A.38.42 269 -148.93 -148.93 1a91.38.38 79 -147.74 -147.74 1kxu.38.43 333 -147.18 -147.18 1psrA.38.45 100 -145.39 -145.39 1dcnA.39.43 424 -174.71 -174.71 1foeA.39.40 377 -158.41 -158.41 1bc5A.39.43 269 -149.43 -149.43 1kxu.39.44 333 -148.19 -148.19 1a91.39.39 79 -148.10 -148.10 1psrA.39.46 100 -144.03 -144.03 1foeA.40.41 377 -160.40 -160.40 1dcnA.40.44 424 -155.07 -155.07 1bc5A.40.44 269 -149.37 -149.37 1a91.40.40 79 -146.89 -146.89 1fgjA.40.15 546 -138.62 -138.62 1kxu.40.45 333 -138.60 -138.60 1foeA.41.42 377 -165.56 -165.56 1bc5A.41.45 269 -154.24 -154.24 1a91.41.41 79 -146.85 -146.85 1dcnA.41.45 424 -139.75 -139.75 1avsA.41.48 90 -139.56 -139.56 1cy5A.41.43 97 -137.16 -137.16 1foeA.42.43 377 -182.16 -182.16 1bc5A.42.46 269 -158.59 -158.59 1avsA.42.49 90 -147.64 -147.64 1a91.42.42 79 -145.13 -145.13 1zac.42.49 90 -143.21 -143.21 1cy5A.42.44 97 -142.55 -142.55 1foeA.43.44 377 -186.13 -186.13 1bc5A.43.47 269 -156.76 -156.76 1avsA.43.50 90 -148.23 -148.23 1zac.43.50 90 -146.59 -146.59 1cy5A.43.45 97 -143.12 -143.12 1a4pA.43.46 96 -141.64 -141.64 1foeA.44.45 377 -185.49 -185.49 1bc5A.44.48 269 -150.90 -150.90 1avsA.44.51 90 -142.60 -142.60 1zac.44.51 90 -142.13 -142.13 1cy5A.44.46 97 -140.58 -140.58 1a4pA.44.47 96 -140.22 -140.22 1foeA.45.46 377 -184.42 -184.42 1bc5A.45.49 269 -152.05 -152.05 1dlc.45.47 584 -144.36 -144.36 1bh9B.45.48 89 -141.39 -141.39 1cy5A.45.47 97 -141.07 -141.07 1zac.45.52 90 -141.04 -141.04 1foeA.46.47 377 -184.32 -184.32 1dlc.46.48 584 -149.96 -149.96 1bc5A.46.50 269 -149.50 -149.50 1cy5A.46.48 97 -142.38 -142.38 1a4pA.46.49 96 -140.78 -140.78 1bh9B.46.49 89 -140.56 -140.56 1foeA.47.48 377 -184.20 -184.20 1dlc.47.49 584 -160.27 -160.27 1bc5A.47.51 269 -150.73 -150.73 1a4pA.47.50 96 -148.36 -148.36 1b54.47.52 257 -144.99 -144.99 1bh9B.47.50 89 -143.20 -143.20 1foeA.48.49 377 -179.53 -179.53 1dlc.48.50 584 -166.67 -166.67 1fc6A.48.54 388 -154.97 -154.97 1bc5A.48.52 269 -154.27 -154.27 1b54.48.53 257 -146.21 -146.21 1a4pA.48.51 96 -144.89 -144.89 1foeA.49.50 377 -173.42 -173.42 1dlc.49.51 584 -168.96 -168.96 1fc6A.49.55 388 -162.43 -162.43 1bc5A.49.53 269 -155.16 -155.16 1a8o.49.49 70 -151.12 -151.12 1b54.49.54 257 -150.97 -150.97 1fc6A.50.56 388 -171.19 -171.19 1dlc.50.52 584 -169.14 -169.14 1foeA.50.51 377 -167.24 -167.24 1b54.50.55 257 -157.56 -157.56 1jc7A.50.51 131 -157.38 -157.38 1bc5A.50.54 269 -156.19 -156.19 1fc6A.51.57 388 -161.23 -161.23 1dlc.51.53 584 -160.54 -160.54 1jc7A.51.52 131 -159.27 -159.27 1a8o.51.51 70 -155.76 -155.76 1b54.51.56 257 -153.50 -153.50 1foeA.51.52 377 -153.31 -153.31 1fc6A.52.58 388 -161.90 -161.90 1jc7A.52.53 131 -157.67 -157.67 1a8o.52.52 70 -154.96 -154.96 1dowA.52.54 205 -151.90 -151.90 1aky.52.55 221 -148.76 -148.76 1dlc.52.54 584 -147.96 -147.96 1a8o.53.53 70 -156.26 -156.26 1jc7A.53.54 131 -153.87 -153.87 1fc6A.53.59 388 -153.55 -153.55 1dowA.53.55 205 -150.90 -150.90 1aky.53.56 221 -148.64 -148.64 1a0fA.53.55 201 -144.92 -144.92 1a8o.54.54 70 -157.67 -157.67 1jc7A.54.55 131 -152.94 -152.94 1fc6A.54.60 388 -148.71 -148.71 1dowA.54.56 205 -147.87 -147.87 1bc5A.54.58 269 -147.35 -147.35 1aky.54.57 221 -144.03 -144.03 1bc5A.55.59 269 -153.73 -153.73 1a8o.55.55 70 -149.59 -149.59 1fc6A.55.61 388 -146.71 -146.71 1fc6A.55.62 388 -145.16 -145.16 1dowA.55.57 205 -142.15 -142.15 1jc7A.55.56 131 -142.09 -142.09 1fc6A.56.63 388 -155.07 -155.07 1bc5A.56.60 269 -154.61 -154.61 3icb.56.59 75 -141.64 -141.64 1ig5A.56.59 75 -140.55 -140.55 1a8o.56.56 70 -138.07 -138.07 1fo3A.56.61 460 -130.34 -130.34 1fc6A.57.64 388 -160.91 -160.91 1bc5A.57.61 269 -151.16 -151.16 3icb.57.60 75 -142.65 -142.65 1ig5A.57.60 75 -142.16 -142.16 3cln.57.62 148 -132.09 -132.09 1a8o.57.57 70 -130.96 -130.96 1fc6A.58.65 388 -163.24 -163.24 1bc5A.58.62 269 -145.62 -145.62 1ig5A.58.61 75 -140.59 -140.59 3icb.58.61 75 -140.24 -140.24 3cln.58.63 148 -136.18 -136.18 1jlvA.58.60 209 -131.78 -131.78 1fc6A.59.66 388 -164.08 -164.08 1bc5A.59.63 269 -143.54 -143.54 1ig5A.59.62 75 -139.09 -139.09 3icb.59.62 75 -138.91 -138.91 3cln.59.64 148 -137.98 -137.98 1jlvA.59.61 209 -135.88 -135.88 1fc6A.60.67 388 -153.85 -153.85 1bc5A.60.64 269 -142.80 -142.80 3cln.60.65 148 -134.68 -134.68 3icb.60.63 75 -134.32 -134.32 1ig5A.60.63 75 -134.15 -134.15 1dw0A.60.60 112 -133.69 -133.69 1fc6A.61.68 388 -146.15 -146.15 1bc5A.61.65 269 -143.32 -143.32 1dw0A.61.61 112 -133.76 -133.76 3cln.61.66 148 -132.52 -132.52 1ig5A.61.64 75 -130.93 -130.93 2gsq.61.61 202 -130.82 -130.82 1bc5A.62.66 269 -143.42 -143.42 1fc6A.62.69 388 -140.32 -140.32 1dw0A.62.62 112 -132.29 -132.29 3cln.62.67 148 -130.66 -130.66 2gsq.62.62 202 -130.58 -130.58 1g4yR.62.67 148 -127.75 -127.75 1bc5A.63.67 269 -141.84 -141.84 1fc6A.63.70 388 -134.36 -134.36 2gsq.63.63 202 -130.66 -130.66 1dw0A.63.63 112 -130.28 -130.28 3cln.63.68 148 -129.00 -129.00 1g4yR.63.68 148 -127.76 -127.76 1bc5A.64.68 269 -140.72 -140.72 2gsq.64.64 202 -130.73 -130.73 3cln.64.69 148 -128.77 -128.77 1g4yR.64.69 148 -128.50 -128.50 1dw0A.64.64 112 -128.17 -128.17 1fc6A.64.71 388 -127.29 -127.29 1bc5A.65.69 269 -138.63 -138.63 2gsq.65.65 202 -131.68 -131.68 3cln.65.70 148 -127.89 -127.89 1g4yR.65.70 148 -127.01 -127.01 1dw0A.65.65 112 -126.02 -126.02 1a59.65.65 378 -125.92 -125.92 1bc5A.66.70 269 -134.68 -134.68 2gsq.66.66 202 -134.46 -134.46 1a59.66.66 378 -127.20 -127.20 3cln.66.71 148 -125.85 -125.85 1g4yR.66.71 148 -124.29 -124.29 1lre.66.66 81 -123.70 -123.70 2gsq.67.67 202 -136.02 -136.02 1bc5A.67.71 269 -128.01 -128.01 1a59.67.67 378 -124.95 -124.95 1fc4A.67.70 401 -123.73 -123.73 1lre.67.67 81 -123.57 -123.57 1dw0A.67.67 112 -122.35 -122.35 2gsq.68.68 202 -136.51 -136.51 1lre.68.68 81 -123.32 -123.32 1bc5A.68.72 269 -122.53 -122.53 1fc4A.68.71 401 -121.91 -121.91 1dw0A.68.68 112 -121.90 -121.90 1urnA.68.68 97 -120.41 -120.41 2gsq.69.69 202 -134.42 -134.42 1lre.69.69 81 -122.27 -122.27 1dw0A.69.69 112 -121.17 -121.17 1bc5A.69.73 269 -119.84 -119.84 1urnA.69.69 97 -119.09 -119.09 1fc4A.69.72 401 -118.49 -118.49 2gsq.70.70 202 -131.69 -131.69 1lre.70.70 81 -123.41 -123.41 1dw0A.70.70 112 -119.74 -119.74 1urnA.70.70 97 -118.86 -118.86 1fc4A.70.73 401 -117.50 -117.50 1bc5A.70.74 269 -115.89 -115.89 2gsq.71.71 202 -129.82 -129.82 1lre.71.71 81 -124.79 -124.79 1urnA.71.71 97 -120.84 -120.84 1dw0A.71.71 112 -119.87 -119.87 1fc4A.71.74 401 -118.50 -118.50 1qk9A.71.71 92 -116.33 -116.33