PFRMAT SS
TARGET T0136
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0136.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 72
METHOD
MODEL 1
A B 0.165
E B 0.242
N H 0.482
N H 0.578
N H 0.531
L H 0.548
K H 0.703
L H 0.425
A H 0.749
S H 0.885
T H 0.856
M H 0.871
E H 0.924
G H 0.944
R H 0.934
V H 0.942
E H 0.958
Q H 0.947
L H 0.937
A H 0.959
E H 0.961
Q H 0.956
R H 0.931
Q H 0.941
V H 0.926
I H 0.835
E H 0.726
A H 0.272
G B 0.217
G B 0.198
G H 0.424
E H 0.810
R H 0.922
R H 0.930
V H 0.912
E H 0.907
K H 0.845
Q H 0.827
H H 0.723
S H 0.715
Q B 0.688
G S 0.729
K B 0.326
Q E 0.250
T B 0.434
A H 0.774
R H 0.907
E H 0.895
R H 0.889
L H 0.756
N H 0.700
N H 0.667
L H 0.379
L S 0.252
D E 0.230
P H 0.545
H S 0.608
S B 0.287
F H 0.289
D H 0.530
E H 0.446
V H 0.694
G H 0.797
A H 0.862
F H 0.836
R H 0.774
K H 0.672
H H 0.376
R H 0.392
T H 0.299
T H 0.201
L S 0.279
F B 0.304
G S 0.198
M H 0.205
D H 0.234
K E 0.194
A B 0.317
V E 0.342
V E 0.295
END