PFRMAT SS TARGET T0136 AUTHOR 4069-6308-1312 METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 7 (1 EBGHSTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0136.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 294 METHOD MODEL 1 A C 0.988 E C 0.653 N C 0.358 N C 0.354 N H 0.513 L H 0.614 K H 0.661 L H 0.717 A H 0.845 S H 0.855 T H 0.857 M H 0.898 E H 0.928 G H 0.892 R H 0.873 V H 0.894 E H 0.939 Q H 0.941 L H 0.961 A H 0.959 E H 0.961 Q H 0.963 R H 0.962 Q H 0.951 V H 0.940 I H 0.905 E H 0.818 A H 0.519 G T 0.468 G C 0.377 G C 0.384 E H 0.568 R H 0.698 R H 0.746 V H 0.794 E H 0.839 K H 0.778 Q H 0.574 H H 0.356 S C 0.357 Q T 0.424 G C 0.371 K C 0.646 Q C 0.651 T C 0.805 A H 0.969 R H 0.987 E H 0.988 R H 0.991 L H 0.980 N H 0.952 N H 0.921 L H 0.816 L H 0.508 D C 0.753 P T 0.771 H T 0.831 S C 0.503 F E 0.455 D E 0.573 E E 0.435 V C 0.377 G C 0.302 A C 0.369 F C 0.461 R C 0.344 K H 0.308 H H 0.398 R H 0.543 T H 0.631 T H 0.698 L H 0.740 F H 0.717 G H 0.661 M H 0.519 D H 0.405 K H 0.279 A T 0.329 V C 0.413 V C 0.485 P C 0.463 A C 0.489 D S 0.274 G E 0.423 V E 0.840 V E 0.928 T E 0.913 G E 0.943 R E 0.912 G E 0.914 T E 0.898 I E 0.800 L T 0.878 G T 0.940 R E 0.587 P E 0.826 V E 0.989 H E 0.998 A E 0.999 A E 0.998 S E 0.978 Q E 0.778 D C 0.596 F T 0.366 T T 0.274 V E 0.277 M E 0.272 G T 0.296 G C 0.272 S C 0.289 A C 0.313 G C 0.483 E H 0.910 T H 0.960 Q H 0.978 S H 0.987 T H 0.991 K H 0.994 V H 0.997 V H 0.997 E H 0.997 T H 0.997 M H 0.998 E H 0.997 Q H 0.997 A H 0.995 L H 0.982 L H 0.913 T T 0.547 G T 0.790 T C 0.835 P C 0.748 F E 0.868 L E 0.985 F E 0.997 F E 0.991 Y E 0.956 D E 0.595 S C 0.458 G S 0.402 G S 0.293 A C 0.467 R C 0.409 I C 0.391 Q C 0.460 E H 0.385 G H 0.470 I H 0.742 D H 0.807 S H 0.875 L H 0.895 S H 0.876 G H 0.857 Y H 0.963 G H 0.987 K H 0.994 M H 0.997 F H 0.997 F H 0.996 A H 0.994 N H 0.990 V H 0.980 K H 0.911 L H 0.680 S T 0.478 G S 0.329 V C 0.442 V C 0.574 P C 0.588 Q E 0.920 I E 0.988 A E 0.989 I E 0.974 I E 0.852 A E 0.409 G S 0.456 P S 0.398 C T 0.300 A C 0.279 G S 0.318 G T 0.305 A E 0.263 S E 0.443 Y E 0.615 S E 0.582 P E 0.461 A C 0.417 L T 0.286 T T 0.356 D T 0.260 F E 0.708 I E 0.885 I E 0.933 M E 0.889 T E 0.459 K T 0.683 K T 0.740 A C 0.763 H E 0.564 M E 0.961 F E 0.989 I E 0.973 T E 0.770 G C 0.651 P H 0.794 Q H 0.921 V H 0.958 I H 0.969 K H 0.938 S H 0.893 V H 0.862 T H 0.730 G T 0.393 E C 0.432 D C 0.631 V C 0.707 T C 0.802 A H 0.522 D H 0.481 E H 0.465 L H 0.484 G T 0.402 G C 0.487 A C 0.492 E H 0.856 A H 0.898 H H 0.894 M H 0.897 A H 0.869 I H 0.733 S T 0.647 G T 0.507 N C 0.679 I E 0.668 H E 0.783 F E 0.872 V E 0.852 A E 0.644 E C 0.529 D C 0.598 D C 0.365 D H 0.841 A H 0.897 A H 0.946 E H 0.973 L H 0.978 I H 0.978 A H 0.988 K H 0.992 K H 0.990 L H 0.989 L H 0.980 S H 0.910 F H 0.842 L H 0.692 P H 0.513 Q H 0.382 N T 0.308 N C 0.389 T C 0.380 E C 0.420 E C 0.535 A C 0.751 S C 0.737 F C 0.574 V C 0.532 N C 0.633 P C 0.548 N C 0.444 N C 0.543 D C 0.682 V C 0.507 S C 0.357 P C 0.642 N H 0.291 T G 0.327 E G 0.339 L H 0.314 R G 0.354 D C 0.274 I C 0.445 V C 0.514 P C 0.595 I C 0.412 D C 0.496 G T 0.437 K T 0.340 K S 0.468 G C 0.857 Y C 0.999 END