PFRMAT SS TARGET T0136 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0136.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 176 METHOD MODEL 1 A C 0.765 E C 0.431 N H 0.526 N H 0.655 N H 0.628 L H 0.678 K H 0.673 L H 0.493 A H 0.714 S H 0.819 T H 0.882 M H 0.930 E H 0.934 G H 0.941 R H 0.920 V H 0.891 E H 0.903 Q H 0.930 L H 0.959 A H 0.958 E H 0.968 Q H 0.964 R H 0.962 Q H 0.965 V H 0.968 I H 0.958 E H 0.919 A H 0.837 G H 0.469 G C 0.402 G T 0.387 E H 0.509 R H 0.564 R H 0.558 V H 0.521 E H 0.601 K H 0.564 Q H 0.389 H T 0.346 S T 0.378 Q C 0.380 G C 0.557 K C 0.620 Q C 0.625 T C 0.741 A H 0.955 R H 0.955 E H 0.943 R H 0.953 L H 0.967 N H 0.922 N H 0.909 L H 0.885 L H 0.596 D T 0.691 P T 0.826 H T 0.818 S T 0.571 F E 0.484 D E 0.534 E E 0.569 V C 0.474 G C 0.396 A T 0.415 F T 0.431 R T 0.380 K T 0.330 H H 0.444 R H 0.491 T H 0.566 T H 0.716 L H 0.735 F H 0.756 G H 0.682 M H 0.659 D H 0.507 K H 0.463 A T 0.337 V C 0.398 V C 0.485 P T 0.511 A T 0.597 D T 0.515 G E 0.614 V E 0.842 V E 0.925 T E 0.854 G E 0.770 R E 0.774 G E 0.782 T E 0.821 I E 0.765 L T 0.816 G T 0.837 R E 0.691 P E 0.928 V E 0.982 H E 0.997 A E 0.996 A E 0.988 S E 0.933 Q E 0.536 D T 0.445 F T 0.425 T E 0.660 V E 0.795 M E 0.658 G E 0.470 G C 0.399 S C 0.373 A C 0.418 G C 0.505 E H 0.769 T H 0.829 Q H 0.962 S H 0.982 T H 0.988 K H 0.989 V H 0.994 V H 0.996 E H 0.996 T H 0.997 M H 0.993 E H 0.992 Q H 0.991 A H 0.980 L H 0.961 L H 0.908 T H 0.706 G C 0.905 T C 0.851 P C 0.778 F E 0.967 L E 0.994 F E 0.994 F E 0.976 Y E 0.800 D C 0.502 S C 0.561 G C 0.619 G C 0.418 A H 0.339 R H 0.442 I H 0.565 Q H 0.556 E H 0.651 G H 0.580 I H 0.792 D H 0.817 S H 0.642 L H 0.806 S H 0.783 G H 0.870 Y H 0.947 G H 0.961 K H 0.975 M H 0.980 F H 0.980 F H 0.984 A H 0.984 N H 0.975 V H 0.934 K H 0.902 L H 0.847 S H 0.482 G T 0.488 V C 0.466 V C 0.453 P C 0.565 Q E 0.924 I E 0.975 A E 0.977 I E 0.962 I E 0.894 A E 0.566 G T 0.670 P T 0.731 C T 0.715 A T 0.599 G T 0.360 G H 0.403 A H 0.309 S H 0.295 Y T 0.246 S T 0.269 P T 0.303 A T 0.388 L T 0.378 T T 0.441 D E 0.511 F E 0.928 I E 0.976 I E 0.973 M E 0.938 T E 0.725 K T 0.750 K T 0.892 A T 0.797 H E 0.349 M E 0.808 F E 0.878 I E 0.863 T E 0.638 G C 0.391 P H 0.861 Q H 0.872 V H 0.968 I H 0.985 K H 0.981 S H 0.942 V H 0.905 T H 0.879 G C 0.758 E C 0.719 D C 0.458 V C 0.424 T C 0.522 A G 0.564 D G 0.758 E G 0.620 L T 0.455 G T 0.401 G C 0.394 A H 0.733 E H 0.834 A H 0.870 H H 0.865 M H 0.824 A H 0.780 I H 0.737 S H 0.452 G C 0.430 N E 0.443 I E 0.590 H E 0.590 F E 0.628 V E 0.685 A E 0.456 E T 0.442 D C 0.527 D H 0.732 D H 0.924 A H 0.949 A H 0.978 E H 0.994 L H 0.994 I H 0.995 A H 0.996 K H 0.995 K H 0.990 L H 0.988 L H 0.964 S H 0.906 F H 0.773 L C 0.438 P T 0.527 Q T 0.608 N T 0.597 N T 0.619 T T 0.527 E C 0.456 E C 0.579 A C 0.698 S C 0.715 F C 0.566 V C 0.581 N C 0.579 P C 0.551 N C 0.573 N C 0.541 D C 0.499 V C 0.388 S C 0.339 P C 0.350 N H 0.424 T H 0.468 E H 0.439 L H 0.394 R T 0.310 D T 0.327 I C 0.321 V C 0.457 P C 0.503 I C 0.576 D T 0.724 G T 0.771 K T 0.785 K T 0.689 G C 0.431 Y C 0.391 D C 0.545 V H 0.822 R H 0.868 D H 0.911 V H 0.914 I H 0.888 A H 0.828 K H 0.731 I H 0.499 V E 0.421 D T 0.309 W T 0.442 G T 0.400 D T 0.365 Y H 0.335 L H 0.280 E E 0.329 V E 0.271 K T 0.406 A T 0.516 G T 0.588 Y T 0.486 A T 0.356 T T 0.380 N H 0.281 L E 0.601 V E 0.803 T E 0.867 A E 0.895 F E 0.907 A E 0.910 R E 0.915 V E 0.846 N T 0.735 G T 0.813 R E 0.587 S E 0.847 V E 0.910 G E 0.979 I E 0.984 V E 0.968 A E 0.934 N E 0.645 Q T 0.387 P T 0.486 S T 0.578 V T 0.547 M T 0.432 S T 0.403 G C 0.531 C C 0.593 L C 0.524 D C 0.675 I H 0.625 N H 0.857 A H 0.986 S H 0.996 D H 0.999 K H 0.998 A H 0.999 A H 0.999 E H 0.999 F H 0.999 V H 0.995 N H 0.992 F H 0.983 C H 0.974 D H 0.911 S H 0.768 F H 0.570 N C 0.807 I C 0.819 P C 0.747 L E 0.900 V E 0.987 Q E 0.991 L E 0.974 V E 0.901 D E 0.490 V T 0.622 P T 0.720 G T 0.755 F T 0.598 L T 0.438 P C 0.448 G C 0.570 V H 0.728 Q H 0.841 Q H 0.844 E H 0.860 Y H 0.900 G H 0.901 G H 0.800 I H 0.978 I H 0.993 R H 0.997 H H 0.997 G H 0.998 A H 0.999 K H 0.996 M H 0.997 L H 0.995 Y H 0.989 A H 0.989 Y H 0.984 S H 0.947 E H 0.687 A C 0.442 T C 0.793 V C 0.687 P C 0.731 K E 0.840 I E 0.979 T E 0.989 V E 0.991 V E 0.970 L E 0.894 R E 0.623 K E 0.443 A T 0.528 Y T 0.576 G T 0.448 G T 0.377 S E 0.357 Y E 0.532 L E 0.474 A E 0.435 M H 0.400 C C 0.404 N T 0.356 R T 0.471 D T 0.493 L T 0.507 G T 0.652 A T 0.695 D T 0.628 A E 0.592 V E 0.807 Y E 0.907 A E 0.836 W T 0.528 P T 0.872 S T 0.890 A T 0.693 E E 0.658 I E 0.939 A E 0.933 V E 0.881 M E 0.500 G C 0.669 A H 0.689 E H 0.786 G H 0.872 A H 0.905 A H 0.919 N H 0.923 V H 0.900 I H 0.855 F H 0.774 R H 0.605 K C 0.447 E H 0.587 I H 0.660 K H 0.735 A H 0.731 A H 0.716 D H 0.763 D H 0.753 P H 0.789 D H 0.778 A H 0.782 M H 0.738 R H 0.743 A H 0.848 E H 0.850 K H 0.835 I H 0.930 E H 0.949 E H 0.958 Y H 0.953 Q H 0.909 N H 0.851 A H 0.742 F H 0.382 N C 0.674 T C 0.800 P H 0.879 Y H 0.927 V H 0.949 A H 0.954 A H 0.962 A H 0.965 R H 0.906 G C 0.770 Q C 0.688 V C 0.387 D T 0.407 D T 0.338 V T 0.345 I C 0.310 D C 0.662 P H 0.636 A H 0.756 D H 0.834 T H 0.941 R H 0.995 R H 0.996 K H 0.997 I H 0.998 A H 0.997 S H 0.993 A H 0.987 L H 0.986 E H 0.954 M H 0.922 Y H 0.875 A H 0.875 T H 0.493 K H 0.534 R H 0.551 Q H 0.541 T H 0.398 R C 0.483 P C 0.503 A C 0.310 K T 0.319 K C 0.309 H T 0.431 G C 0.469 N T 0.481 F C 0.411 P C 0.716 C C 0.888 END