PFRMAT SS TARGET T0136 AUTHOR 4069-6308-1312 METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 7 (1 EBGHSTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0136.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 176 METHOD MODEL 1 A C 0.999 E C 0.830 N C 0.291 N H 0.320 N H 0.457 L H 0.480 K H 0.573 L H 0.602 A H 0.797 S H 0.803 T H 0.806 M H 0.851 E H 0.882 G H 0.815 R H 0.773 V H 0.772 E H 0.881 Q H 0.898 L H 0.944 A H 0.940 E H 0.945 Q H 0.956 R H 0.953 Q H 0.947 V H 0.951 I H 0.929 E H 0.872 A H 0.650 G T 0.433 G T 0.402 G C 0.389 E H 0.331 R H 0.491 R H 0.483 V H 0.499 E H 0.744 K H 0.639 Q H 0.463 H H 0.288 S T 0.314 Q T 0.549 G C 0.428 K C 0.664 Q C 0.628 T C 0.893 A H 0.934 R H 0.963 E H 0.960 R H 0.975 L H 0.966 N H 0.943 N H 0.917 L H 0.770 L H 0.529 D C 0.755 P T 0.809 H T 0.869 S C 0.541 F E 0.421 D E 0.511 E C 0.418 V C 0.437 G C 0.388 A C 0.355 F C 0.422 R H 0.281 K H 0.383 H H 0.407 R H 0.678 T H 0.699 T H 0.734 L H 0.745 F H 0.668 G H 0.615 M H 0.466 D H 0.381 K T 0.282 A T 0.271 V C 0.428 V C 0.602 P C 0.485 A C 0.460 D S 0.433 G E 0.671 V E 0.921 V E 0.947 T E 0.861 G E 0.868 R E 0.795 G E 0.820 T E 0.811 I E 0.698 L T 0.900 G T 0.953 R E 0.511 P E 0.862 V E 0.990 H E 0.997 A E 1.000 A E 0.999 S E 0.985 Q E 0.873 D C 0.549 F C 0.374 T E 0.371 V E 0.604 M E 0.494 G C 0.262 G C 0.323 S T 0.363 A H 0.341 G H 0.613 E H 0.901 T H 0.959 Q H 0.975 S H 0.988 T H 0.991 K H 0.991 V H 0.995 V H 0.994 E H 0.994 T H 0.995 M H 0.996 E H 0.996 Q H 0.997 A H 0.997 L H 0.989 L H 0.933 T T 0.594 G T 0.804 T C 0.853 P C 0.765 F E 0.865 L E 0.985 F E 0.996 F E 0.990 Y E 0.936 D E 0.553 S S 0.442 G S 0.451 G S 0.380 A C 0.391 R C 0.294 I H 0.343 Q H 0.375 E H 0.427 G H 0.430 I H 0.579 D H 0.737 S H 0.799 L H 0.851 S H 0.874 G H 0.862 Y H 0.953 G H 0.976 K H 0.989 M H 0.995 F H 0.995 F H 0.994 A H 0.987 N H 0.978 V H 0.965 K H 0.912 L H 0.757 S T 0.425 G T 0.436 V T 0.410 V C 0.553 P C 0.715 Q E 0.898 I E 0.989 A E 0.996 I E 0.992 I E 0.943 A E 0.542 G S 0.464 P S 0.395 C T 0.354 A T 0.294 G T 0.327 G T 0.357 A E 0.438 S E 0.718 Y E 0.773 S E 0.697 P E 0.471 A E 0.293 L T 0.436 T S 0.295 D C 0.397 F E 0.871 I E 0.953 I E 0.967 M E 0.907 T E 0.514 K T 0.604 K T 0.711 A C 0.839 H E 0.425 M E 0.946 F E 0.981 I E 0.955 T E 0.682 G C 0.718 P H 0.718 Q H 0.865 V H 0.932 I H 0.957 K H 0.885 S H 0.838 V H 0.811 T H 0.514 G T 0.665 E C 0.515 D C 0.662 V C 0.529 T C 0.710 A G 0.577 D G 0.541 E G 0.638 L C 0.313 G C 0.428 G C 0.331 A E 0.419 E E 0.637 A E 0.803 H E 0.789 M E 0.718 A E 0.546 I E 0.344 S T 0.305 G E 0.318 N E 0.588 I E 0.847 H E 0.906 F E 0.940 V E 0.929 A E 0.719 E C 0.402 D S 0.620 D H 0.597 D H 0.972 A H 0.985 A H 0.995 E H 0.995 L H 0.994 I H 0.991 A H 0.993 K H 0.993 K H 0.989 L H 0.986 L H 0.966 S H 0.852 F H 0.776 L H 0.431 P C 0.406 Q T 0.331 N T 0.330 N C 0.351 T C 0.360 E C 0.476 E C 0.661 A C 0.750 S C 0.747 F C 0.569 V C 0.578 N C 0.707 P C 0.542 N C 0.420 N C 0.517 D C 0.618 V C 0.475 S C 0.390 P C 0.577 N C 0.336 T G 0.243 E G 0.258 L C 0.268 R C 0.275 D C 0.350 I C 0.487 V C 0.672 P C 0.608 I C 0.451 D C 0.576 G T 0.549 K T 0.594 K C 0.463 G C 0.663 Y C 0.496 D C 0.505 V H 0.891 R H 0.936 D H 0.947 V H 0.961 I H 0.956 A H 0.919 K H 0.856 I H 0.787 V H 0.592 D C 0.410 W T 0.377 G H 0.366 D H 0.456 Y H 0.650 L H 0.649 E H 0.580 V H 0.490 K H 0.322 A T 0.314 G T 0.426 Y H 0.243 A C 0.410 T T 0.491 N T 0.460 L E 0.482 V E 0.799 T E 0.810 A E 0.875 F E 0.851 A E 0.877 R E 0.845 V E 0.751 N T 0.841 G T 0.912 R E 0.583 S E 0.762 V E 0.963 G E 0.990 I E 0.996 V E 0.994 A E 0.942 N E 0.614 Q C 0.493 P C 0.296 S T 0.287 V C 0.324 M C 0.353 S C 0.324 G T 0.271 C C 0.391 L C 0.472 D C 0.725 I H 0.635 N H 0.781 A H 0.924 S H 0.983 D H 0.989 K H 0.992 A H 0.995 A H 0.996 E H 0.994 F H 0.993 V H 0.989 N H 0.968 F H 0.944 C H 0.899 D H 0.751 S H 0.659 F T 0.376 N T 0.516 I C 0.550 P C 0.753 L E 0.760 V E 0.964 Q E 0.993 L E 0.987 V E 0.938 D E 0.529 V C 0.502 P S 0.338 G T 0.384 F C 0.403 L C 0.344 P C 0.329 G C 0.465 V H 0.846 Q H 0.910 Q H 0.929 E H 0.927 Y H 0.938 G H 0.869 G H 0.868 I H 0.925 I H 0.984 R H 0.992 H H 0.990 G H 0.994 A H 0.995 K H 0.996 M H 0.994 L H 0.996 Y H 0.995 A H 0.993 Y H 0.980 S H 0.911 E H 0.584 A T 0.311 T S 0.356 V S 0.613 P C 0.712 K E 0.697 I E 0.976 T E 0.992 V E 0.991 V E 0.958 L E 0.807 R E 0.412 K S 0.425 A C 0.374 Y S 0.358 G S 0.401 G C 0.334 S C 0.275 Y H 0.259 L E 0.326 A E 0.431 M E 0.453 C C 0.403 N C 0.350 R G 0.425 D G 0.476 L S 0.266 G C 0.365 A T 0.376 D T 0.282 A E 0.600 V E 0.797 Y E 0.851 A E 0.771 W C 0.459 P T 0.711 S T 0.732 A C 0.447 E E 0.721 I E 0.897 A E 0.930 V E 0.835 M E 0.429 G C 0.550 A H 0.696 E H 0.815 G H 0.871 A H 0.901 A H 0.853 N H 0.774 V H 0.677 I H 0.573 F H 0.389 R C 0.283 K C 0.532 E H 0.605 I H 0.622 K H 0.625 A H 0.623 A H 0.661 D H 0.665 D H 0.662 P H 0.647 D H 0.743 A H 0.802 M H 0.844 R H 0.857 A H 0.860 E H 0.894 K H 0.926 I H 0.965 E H 0.969 E H 0.971 Y H 0.969 Q H 0.949 N H 0.821 A H 0.578 F T 0.508 N C 0.368 T C 0.618 P H 0.967 Y H 0.985 V H 0.988 A H 0.988 A H 0.961 A H 0.786 R T 0.828 G T 0.858 Q C 0.820 V C 0.676 D E 0.313 D E 0.400 V E 0.511 I E 0.474 D C 0.790 P H 0.336 A H 0.711 D H 0.758 T H 0.931 R H 0.974 R H 0.986 K H 0.993 I H 0.993 A H 0.993 S H 0.993 A H 0.992 L H 0.988 E H 0.976 M H 0.943 Y H 0.887 A H 0.753 T H 0.428 K H 0.314 R T 0.256 Q C 0.288 T C 0.362 R C 0.522 P C 0.649 A C 0.331 K C 0.237 K C 0.295 H C 0.521 G C 0.503 N C 0.554 F C 0.619 P C 0.939 C C 0.999 END