PFRMAT SS TARGET T0136 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 11 (1 ABCDEFGHIST ) METHOD The input amino acid frequencies were determined from METHOD alignment T0136.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 176 METHOD MODEL 1 A B 0.250 E H 0.203 N H 0.517 N H 0.554 N H 0.595 L H 0.698 K H 0.627 L H 0.481 A H 0.674 S H 0.806 T H 0.725 M H 0.751 E H 0.708 G H 0.795 R H 0.543 V H 0.551 E H 0.806 Q H 0.728 L H 0.828 A H 0.918 E H 0.933 Q H 0.944 R H 0.924 Q H 0.905 V H 0.865 I H 0.784 E H 0.636 A H 0.287 G H 0.192 G H 0.163 G H 0.213 E H 0.409 R H 0.516 R H 0.417 V H 0.391 E H 0.617 K H 0.539 Q H 0.347 H H 0.322 S H 0.492 Q B 0.330 G S 0.340 K B 0.249 Q B 0.353 T B 0.495 A H 0.756 R H 0.895 E H 0.879 R H 0.865 L H 0.726 N H 0.711 N H 0.662 L H 0.492 L S 0.221 D E 0.310 P H 0.536 H S 0.537 S B 0.305 F A 0.253 D B 0.394 E E 0.259 V H 0.189 G B 0.164 A H 0.258 F H 0.267 R H 0.384 K H 0.361 H H 0.217 R H 0.373 T H 0.401 T H 0.607 L H 0.593 F H 0.608 G H 0.635 M H 0.591 D H 0.489 K H 0.418 A H 0.259 V B 0.268 V C 0.241 P H 0.166 A B 0.173 D S 0.226 G B 0.347 V E 0.597 V E 0.474 T E 0.215 G E 0.319 R S 0.338 G B 0.384 T A 0.310 I F 0.291 L D 0.726 G S 0.416 R B 0.538 P E 0.527 V E 0.678 H E 0.671 A E 0.599 A E 0.447 S E 0.272 Q D 0.160 D E 0.214 F S 0.224 T E 0.293 V A 0.306 M E 0.161 G S 0.172 G D 0.200 S H 0.178 A S 0.217 G C 0.215 E H 0.564 T H 0.668 Q H 0.764 S H 0.858 T H 0.921 K H 0.931 V H 0.921 V H 0.944 E H 0.965 T H 0.951 M H 0.940 E H 0.936 Q H 0.952 A H 0.888 L H 0.753 L H 0.696 T B 0.704 G T 0.457 T B 0.600 P E 0.637 F E 0.583 L E 0.770 F E 0.776 F E 0.647 Y A 0.325 D H 0.174 S B 0.292 G S 0.346 G D 0.163 A H 0.274 R E 0.237 I H 0.382 Q H 0.503 E H 0.576 G H 0.541 I H 0.743 D H 0.806 S H 0.770 L H 0.725 S H 0.821 G H 0.828 Y H 0.866 G H 0.907 K H 0.956 M H 0.964 F H 0.959 F H 0.944 A H 0.935 N H 0.857 V H 0.805 K H 0.748 L H 0.491 S H 0.292 G B 0.193 V S 0.319 V B 0.457 P E 0.560 Q E 0.610 I E 0.604 A E 0.672 I E 0.517 I A 0.371 A D 0.237 G D 0.265 P I 0.283 C S 0.175 A S 0.176 G H 0.171 G H 0.264 A H 0.355 S H 0.390 Y H 0.244 S E 0.253 P H 0.288 A H 0.252 L S 0.294 T B 0.290 D G 0.255 F E 0.478 I E 0.550 I E 0.535 M E 0.390 T C 0.523 K G 0.604 K S 0.698 A B 0.503 H E 0.375 M E 0.606 F E 0.479 I E 0.269 T B 0.217 G C 0.253 P H 0.663 Q H 0.812 V H 0.836 I H 0.839 K H 0.857 S H 0.752 V H 0.680 T B 0.628 G S 0.696 E B 0.519 D E 0.345 V B 0.426 T B 0.564 A I 0.434 D H 0.492 E S 0.323 L B 0.258 G S 0.326 G B 0.249 A H 0.263 E H 0.502 A A 0.336 H E 0.367 M E 0.347 A H 0.261 I H 0.433 S B 0.456 G S 0.432 N B 0.272 I E 0.377 H E 0.279 F E 0.497 V E 0.392 A E 0.342 E B 0.303 D B 0.240 D H 0.520 D H 0.814 A H 0.870 A H 0.915 E H 0.956 L H 0.963 I H 0.965 A H 0.939 K H 0.932 K H 0.952 L H 0.881 L H 0.682 S H 0.764 F S 0.454 L B 0.374 P B 0.210 Q H 0.400 N S 0.334 N E 0.279 T S 0.256 E C 0.248 E B 0.324 A B 0.435 S B 0.399 F E 0.306 V B 0.350 N B 0.361 P B 0.227 N B 0.163 N B 0.283 D B 0.287 V H 0.173 S B 0.228 P B 0.365 N H 0.259 T H 0.398 E H 0.397 L H 0.296 R H 0.289 D H 0.282 I H 0.241 V B 0.281 P E 0.241 I B 0.273 D E 0.546 G H 0.440 K S 0.479 K B 0.341 G H 0.229 Y H 0.170 D E 0.241 V H 0.418 R H 0.725 D H 0.725 V H 0.789 I H 0.564 A H 0.555 K H 0.414 I H 0.321 V H 0.255 D E 0.215 W H 0.326 G H 0.326 D H 0.352 Y H 0.439 L H 0.524 E H 0.506 V H 0.339 K B 0.300 A H 0.365 G S 0.320 Y S 0.327 A H 0.360 T H 0.600 N H 0.548 L H 0.437 V H 0.263 T H 0.240 A E 0.278 F E 0.165 A B 0.382 R A 0.345 V D 0.245 N D 0.641 G S 0.577 R B 0.546 S E 0.418 V E 0.466 G E 0.566 I E 0.458 V E 0.324 A E 0.360 N E 0.238 Q E 0.267 P H 0.203 S S 0.170 V E 0.154 M F 0.136 S D 0.229 G S 0.378 C B 0.362 L B 0.291 D B 0.316 I H 0.470 N H 0.618 A H 0.745 S H 0.912 D H 0.946 K H 0.941 A H 0.945 A H 0.953 E H 0.969 F H 0.955 V H 0.939 N H 0.931 F H 0.915 C H 0.808 D H 0.621 S H 0.632 F B 0.624 N S 0.554 I B 0.560 P E 0.542 L E 0.543 V E 0.619 Q E 0.743 L E 0.509 V E 0.448 D A 0.304 V B 0.189 P G 0.210 G S 0.186 F S 0.274 L C 0.232 P H 0.255 G H 0.285 V H 0.631 Q H 0.754 Q H 0.825 E H 0.826 Y H 0.834 G H 0.434 G H 0.716 I H 0.925 I H 0.955 R H 0.948 H H 0.935 G H 0.928 A H 0.940 K H 0.947 M H 0.950 L H 0.914 Y H 0.922 A H 0.910 Y H 0.766 S H 0.587 E S 0.348 A E 0.335 T S 0.161 V B 0.360 P E 0.520 K E 0.562 I E 0.669 T E 0.787 V E 0.656 V E 0.530 L S 0.257 R D 0.212 K S 0.171 A S 0.132 Y S 0.165 G C 0.166 G H 0.254 S H 0.376 Y H 0.374 L H 0.323 A H 0.306 M H 0.244 C B 0.167 N H 0.222 R H 0.332 D H 0.212 L S 0.199 G C 0.217 A H 0.221 D S 0.202 A E 0.331 V E 0.426 Y E 0.363 A B 0.362 W B 0.365 P H 0.317 S S 0.377 A E 0.368 E E 0.403 I E 0.490 A E 0.615 V E 0.335 M E 0.292 G C 0.404 A I 0.433 E H 0.691 G H 0.680 A H 0.822 A H 0.826 N H 0.788 V H 0.759 I H 0.668 F H 0.386 R H 0.294 K B 0.290 E H 0.615 I H 0.709 K H 0.543 A H 0.735 A H 0.717 D H 0.710 D H 0.659 P H 0.782 D H 0.817 A H 0.858 M H 0.820 R H 0.799 A H 0.827 E H 0.885 K H 0.921 I H 0.930 E H 0.931 E H 0.918 Y H 0.880 Q H 0.811 N H 0.704 A H 0.457 F S 0.295 N S 0.215 T B 0.429 P H 0.732 Y H 0.904 V H 0.939 A H 0.946 A H 0.866 A H 0.855 R B 0.766 G S 0.558 Q H 0.336 V E 0.302 D G 0.253 D E 0.228 V E 0.329 I B 0.443 D E 0.365 P I 0.412 A H 0.581 D H 0.530 T H 0.666 R H 0.866 R H 0.941 K H 0.955 I H 0.949 A H 0.960 S H 0.972 A H 0.964 L H 0.932 E H 0.931 M H 0.909 Y H 0.834 A H 0.706 T H 0.472 K H 0.394 R H 0.436 Q H 0.358 T H 0.273 R C 0.292 P B 0.337 A B 0.271 K B 0.186 K G 0.175 H B 0.203 G D 0.203 N E 0.239 F B 0.419 P E 0.309 C E 0.169 END