//  run from pce/casp5/t0135

SetSeed

InfilePrefix 
Include define-score.script

Time

MakeGenericFragmentLibrary
Time


// The following alignments are believed to be good:
InFilePrefix decoys/
OutFilePrefix decoys/

ClearConform

ReadConformPDB T0135.try26-opt-scwrl.pdb
ReadConformPDB T0135.try13-opt.pdb

PrintAllConformPDB T0135.try26-13.super superpose
ClearConform

ReadConformPDB T0135.try14-opt.pdb
ReadConformPDB T0135.try15-opt-scwrl.pdb

PrintAllConformPDB T0135.try14-15.super superpose

ClearConform

ReadConformPDB T0135.try9-opt-scwrl.pdb
ReadConformPDB T0135.try10-opt-scwrl.pdb
ReadConformPDB T0135.try11-opt-scwrl.pdb

PrintAllConformPDB T0135.try9-10-11.super superpose

ClearConform

ReadConformPDB T0135.try13-opt.pdb
ReadConformPDB T0135.try12-opt-scwrl.pdb
ReadConformPDB T0135.try11-opt-scwrl.pdb
ReadConformPDB T0135.try10-opt-scwrl.pdb
ReadConformPDB T0135.try9-opt-scwrl.pdb

PrintAllConformPDB T0135.try13-12-11-10-9.super superpose

ClearConform

ReadConformPDB T0135.try6-opt.pdb
ReadConformPDB T0135.try4-opt.pdb

PrintAllConformPDB T0135.try6-try4.super superpose


PopConform

ReadConformPDB T0135.try3-opt.pdb

PrintAllConformPDB T0135.try6-try3.super superpose



quit