PFRMAT SS
TARGET T0135
AUTHOR 4069-6308-1312
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0135.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 14
METHOD
MODEL 1
M C 0.990
A C 0.841
T C 0.482
R C 0.340
T C 0.419
P C 0.432
K C 0.295
L E 0.462
V C 0.480
K E 0.733
H E 0.980
T E 0.977
L E 0.980
L E 0.969
T E 0.891
R E 0.761
F E 0.423
K C 0.442
D T 0.505
E T 0.582
I C 0.676
T C 0.879
R H 0.787
E H 0.868
Q H 0.918
I H 0.977
D H 0.983
N H 0.980
Y H 0.979
I H 0.978
N H 0.923
D H 0.876
Y H 0.865
T H 0.780
N H 0.679
L H 0.678
L H 0.653
D H 0.468
L H 0.431
I C 0.492
P C 0.290
S E 0.267
M E 0.694
K E 0.874
S E 0.896
F E 0.833
N E 0.708
W C 0.389
G C 0.412
T C 0.358
D C 0.492
L C 0.421
G C 0.454
M H 0.312
E H 0.360
S H 0.463
A H 0.563
E H 0.546
L H 0.474
N H 0.281
R T 0.377
G C 0.326
Y C 0.679
T E 0.374
H E 0.916
A E 0.982
F E 0.991
E E 0.974
S E 0.859
T E 0.716
F E 0.412
E C 0.530
S C 0.754
K H 0.865
S H 0.920
G H 0.935
L H 0.974
Q H 0.970
E H 0.941
Y H 0.913
L H 0.802
D H 0.661
S C 0.438
A H 0.716
A H 0.559
L H 0.537
A H 0.738
A H 0.513
F H 0.490
A H 0.530
E H 0.414
G H 0.367
F H 0.294
L C 0.290
P H 0.439
T H 0.418
L G 0.236
S T 0.458
Q T 0.691
R C 0.511
L E 0.704
V E 0.910
I E 0.938
D E 0.849
Y E 0.491
F E 0.364
L C 0.614
Y C 0.998
END