PFRMAT SS
TARGET T0135
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0135.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 14
METHOD
MODEL 1
M B 0.177
A E 0.203
T B 0.246
R S 0.167
T H 0.230
P H 0.422
K H 0.389
L H 0.430
V E 0.315
K E 0.234
H E 0.572
T E 0.652
L E 0.725
L A 0.432
T E 0.461
R E 0.419
F B 0.335
K B 0.247
D H 0.351
E S 0.673
I B 0.424
T B 0.550
R H 0.753
E H 0.894
Q H 0.926
I H 0.956
D H 0.962
N H 0.954
Y H 0.939
I H 0.897
N H 0.909
D H 0.835
Y H 0.762
T H 0.872
N H 0.815
L H 0.713
L H 0.652
D H 0.597
L H 0.429
I H 0.242
P H 0.387
S H 0.221
M E 0.337
K E 0.273
S E 0.325
F E 0.406
N E 0.346
W E 0.211
G D 0.231
T E 0.164
D E 0.315
L I 0.148
G B 0.199
M H 0.317
E H 0.309
S H 0.323
A H 0.449
E H 0.568
L H 0.497
N H 0.264
R B 0.245
G S 0.261
Y E 0.304
T E 0.209
H E 0.478
A E 0.566
F E 0.661
E A 0.462
S E 0.436
T E 0.455
F E 0.304
E H 0.199
S B 0.446
K I 0.480
S H 0.844
G H 0.766
L H 0.830
Q H 0.833
E H 0.771
Y H 0.666
L H 0.670
D G 0.349
S A 0.446
A I 0.542
A H 0.656
L H 0.340
A H 0.335
A H 0.412
F H 0.479
A H 0.437
E H 0.426
G H 0.403
F S 0.208
L B 0.303
P H 0.434
T H 0.377
L H 0.310
S H 0.338
Q S 0.319
R E 0.315
L E 0.622
V E 0.628
I E 0.493
D E 0.385
Y E 0.296
F E 0.386
L E 0.228
Y E 0.193
END