PFRMAT SS
TARGET T0134
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0134.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 4
METHOD
MODEL 1
G C 0.895
E C 0.740
P C 0.649
V C 0.490
Q C 0.498
N C 0.422
G T 0.395
A T 0.424
P T 0.445
E T 0.394
E C 0.389
E C 0.506
Q C 0.628
L C 0.745
P T 0.457
P T 0.562
E T 0.667
S T 0.736
S T 0.521
Y T 0.455
S T 0.399
L T 0.300
L T 0.294
A T 0.382
E T 0.404
N T 0.599
S T 0.436
Y E 0.791
V E 0.902
K E 0.917
M E 0.945
T E 0.921
C E 0.864
D E 0.594
I T 0.520
R T 0.643
G T 0.546
S T 0.466
L T 0.501
Q T 0.603
E T 0.586
D T 0.624
S T 0.471
Q C 0.428
V E 0.790
T E 0.948
V E 0.978
A E 0.981
I E 0.982
V E 0.968
L E 0.892
E E 0.573
N T 0.566
R T 0.708
S T 0.652
S T 0.567
S T 0.323
I E 0.310
L E 0.370
K E 0.424
G E 0.477
M E 0.455
E H 0.548
L H 0.686
S H 0.708
V H 0.788
L H 0.771
D H 0.701
S H 0.629
L H 0.577
N H 0.398
A H 0.362
R H 0.334
M H 0.329
A C 0.405
R T 0.464
P T 0.792
Q T 0.848
G T 0.834
S T 0.572
S T 0.366
V T 0.476
H T 0.539
D T 0.541
G T 0.440
V E 0.382
P E 0.524
V E 0.417
P C 0.427
F C 0.325
Q C 0.339
L C 0.534
P T 0.516
P T 0.532
G T 0.633
V T 0.620
S T 0.447
N T 0.512
E T 0.504
A T 0.387
Q E 0.643
Y E 0.895
V E 0.959
F E 0.965
T E 0.955
I E 0.867
Q E 0.732
S E 0.517
I H 0.490
V H 0.712
M H 0.792
A H 0.836
Q H 0.791
K H 0.654
L H 0.592
K H 0.367
G E 0.461
T E 0.673
L E 0.762
S E 0.848
F E 0.824
I E 0.825
A E 0.836
K E 0.588
N E 0.365
D T 0.485
E T 0.558
G T 0.568
A T 0.532
T T 0.494
H T 0.521
E T 0.380
K E 0.437
L E 0.562
D E 0.634
F E 0.753
R E 0.752
L E 0.571
H C 0.401
F E 0.374
S E 0.410
C E 0.419
S E 0.538
S E 0.706
Y E 0.862
L E 0.876
I E 0.726
T E 0.444
T C 0.506
P C 0.560
C C 0.513
Y C 0.500
S H 0.445
D H 0.880
A H 0.980
F H 0.987
A H 0.983
K H 0.977
L H 0.963
L H 0.948
E H 0.785
S H 0.423
G C 0.459
D T 0.504
L T 0.425
S T 0.416
M E 0.485
S T 0.406
S E 0.573
I E 0.821
K E 0.827
V E 0.711
D T 0.373
G E 0.564
I E 0.778
R E 0.864
M E 0.913
S E 0.868
F H 0.829
Q H 0.984
N H 0.974
L H 0.982
L H 0.986
A H 0.987
K H 0.982
I H 0.965
C H 0.935
F H 0.874
H H 0.754
H H 0.449
H C 0.634
F C 0.421
S E 0.624
V E 0.809
V E 0.832
E E 0.748
R E 0.414
V C 0.609
D C 0.504
S H 0.418
C H 0.491
A H 0.460
S H 0.441
M H 0.382
Y T 0.348
S T 0.372
R T 0.284
S T 0.331
I T 0.715
Q T 0.811
G T 0.810
H T 0.483
H E 0.710
V E 0.902
C E 0.938
L E 0.961
L E 0.974
V E 0.965
K E 0.915
K E 0.703
G T 0.596
E T 0.784
N T 0.709
S T 0.418
V E 0.732
S E 0.790
V E 0.672
D T 0.422
G T 0.569
K T 0.534
C T 0.483
S C 0.474
D T 0.420
S H 0.865
T H 0.887
L H 0.930
L H 0.962
S H 0.971
N H 0.968
L H 0.976
L H 0.991
E H 0.993
E H 0.993
M H 0.995
K H 0.990
A H 0.985
T H 0.964
L H 0.923
A H 0.802
K H 0.528
C C 0.970
END