PFRMAT SS
TARGET T0134
AUTHOR 4069-6308-1312
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0134.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 4
METHOD
MODEL 1
G C 0.996
E C 0.887
P C 0.622
V C 0.482
Q C 0.371
N C 0.261
G C 0.419
A C 0.859
P C 0.467
E C 0.299
E C 0.328
E C 0.386
Q C 0.520
L C 0.497
P C 0.845
P C 0.517
E C 0.436
S C 0.534
S H 0.590
Y H 0.688
S H 0.739
L H 0.711
L H 0.583
A H 0.463
E T 0.295
N C 0.351
S T 0.344
Y E 0.273
V E 0.545
K E 0.890
M E 0.947
T E 0.921
C E 0.830
D E 0.508
I C 0.337
R T 0.330
G C 0.515
S C 0.700
L T 0.268
Q G 0.347
E G 0.341
D T 0.368
S S 0.372
Q C 0.447
V E 0.799
T E 0.917
V E 0.961
A E 0.979
I E 0.976
V E 0.980
L E 0.880
E E 0.587
N C 0.344
R S 0.310
S C 0.408
S T 0.251
S H 0.320
I H 0.317
L H 0.313
K H 0.360
G H 0.418
M H 0.368
E E 0.459
L H 0.430
S H 0.401
V H 0.634
L H 0.732
D H 0.735
S H 0.696
L H 0.760
N H 0.628
A H 0.613
R H 0.590
M H 0.494
A H 0.457
R C 0.479
P C 0.544
Q T 0.733
G T 0.599
S C 0.582
S C 0.354
V C 0.373
H C 0.336
D C 0.325
G C 0.440
V C 0.542
P C 0.543
V C 0.637
P C 0.620
F C 0.420
Q C 0.357
L C 0.466
P C 0.868
P T 0.642
G T 0.750
V C 0.548
S C 0.526
N S 0.336
E T 0.281
A C 0.493
Q E 0.496
Y E 0.752
V E 0.947
F E 0.948
T E 0.975
I E 0.945
Q E 0.896
S E 0.795
I E 0.686
V E 0.548
M H 0.514
A H 0.535
Q H 0.338
K H 0.324
L C 0.261
K E 0.275
G E 0.504
T E 0.791
L E 0.900
S E 0.936
F E 0.896
I E 0.896
A E 0.686
K E 0.463
N C 0.563
D C 0.469
E T 0.669
G T 0.525
A C 0.475
T C 0.472
H C 0.269
E H 0.300
K H 0.362
L H 0.273
D E 0.254
F E 0.445
R E 0.516
L E 0.460
H E 0.474
F E 0.479
S E 0.478
C E 0.566
S E 0.584
S E 0.839
Y E 0.889
L E 0.877
I E 0.636
T C 0.478
T S 0.444
P C 0.580
C C 0.666
Y C 0.538
S H 0.301
D H 0.575
A H 0.729
F H 0.815
A H 0.809
K H 0.804
L H 0.740
L H 0.621
E H 0.427
S T 0.265
G T 0.403
D C 0.525
L C 0.345
S C 0.395
M C 0.229
S E 0.255
S E 0.482
I E 0.778
K E 0.827
V E 0.798
D T 0.665
G T 0.611
I E 0.829
R E 0.952
M E 0.943
S E 0.862
F H 0.584
Q H 0.844
N H 0.911
L H 0.952
L H 0.944
A H 0.946
K H 0.930
I H 0.897
C H 0.804
F H 0.639
H H 0.473
H T 0.335
H C 0.364
F C 0.472
S E 0.554
V E 0.548
V E 0.628
E E 0.507
R E 0.426
V C 0.350
D S 0.250
S H 0.303
C H 0.335
A H 0.311
S E 0.323
M H 0.235
Y E 0.314
S E 0.321
R E 0.485
S E 0.417
I T 0.266
Q T 0.779
G T 0.656
H C 0.505
H E 0.625
V E 0.829
C E 0.921
L E 0.943
L E 0.942
V E 0.932
K E 0.883
K E 0.620
G C 0.282
E S 0.333
N S 0.493
S E 0.334
V E 0.750
S E 0.868
V E 0.787
D C 0.300
G S 0.441
K C 0.363
C C 0.384
S S 0.537
D C 0.446
S H 0.731
T H 0.780
L H 0.866
L H 0.949
S H 0.947
N H 0.950
L H 0.961
L H 0.971
E H 0.957
E H 0.929
M H 0.946
K H 0.946
A H 0.933
T H 0.920
L H 0.848
A H 0.596
K T 0.379
C C 0.997
END