PFRMAT SS
TARGET T0134
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0134.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 4
METHOD
MODEL 1
G B 0.164
E B 0.292
P B 0.212
V H 0.224
Q H 0.187
N H 0.254
G S 0.295
A H 0.237
P H 0.234
E H 0.275
E H 0.167
E B 0.351
Q B 0.359
L B 0.461
P B 0.472
P H 0.279
E S 0.544
S E 0.352
S H 0.316
Y H 0.182
S E 0.251
L H 0.375
L H 0.296
A H 0.259
E H 0.217
N B 0.294
S H 0.196
Y E 0.306
V E 0.500
K E 0.442
M E 0.465
T E 0.464
C E 0.351
D E 0.384
I H 0.250
R S 0.209
G S 0.201
S B 0.336
L H 0.284
Q H 0.370
E H 0.313
D S 0.231
S S 0.244
Q E 0.422
V E 0.566
T E 0.595
V E 0.662
A E 0.624
I E 0.691
V E 0.580
L E 0.363
E F 0.143
N B 0.168
R E 0.181
S B 0.333
S H 0.400
S H 0.517
I H 0.506
L A 0.259
K H 0.340
G A 0.303
M E 0.371
E E 0.462
L E 0.387
S E 0.293
V H 0.396
L H 0.375
D H 0.457
S H 0.599
L H 0.270
N H 0.213
A H 0.326
R H 0.325
M E 0.288
A B 0.286
R B 0.396
P C 0.215
Q G 0.285
G S 0.532
S B 0.294
S E 0.278
V E 0.247
H F 0.209
D B 0.253
G S 0.370
V B 0.558
P B 0.352
V B 0.360
P H 0.168
F I 0.238
Q S 0.211
L B 0.366
P C 0.409
P G 0.358
G S 0.536
V E 0.292
S B 0.187
N I 0.285
E S 0.158
A E 0.397
Q A 0.415
Y E 0.538
V E 0.467
F E 0.585
T E 0.601
I A 0.448
Q H 0.373
S E 0.324
I H 0.369
V H 0.387
M H 0.610
A H 0.458
Q H 0.410
K H 0.267
L E 0.302
K S 0.145
G C 0.269
T E 0.433
L E 0.486
S E 0.459
F E 0.591
I E 0.579
A E 0.506
K E 0.250
N B 0.180
D S 0.191
E H 0.168
G S 0.233
A E 0.201
T H 0.189
H S 0.181
E H 0.196
K E 0.209
L B 0.289
D E 0.289
F E 0.355
R E 0.233
L E 0.413
H E 0.390
F E 0.342
S E 0.287
C E 0.419
S E 0.360
S E 0.401
Y E 0.619
L E 0.455
I B 0.362
T B 0.291
T B 0.292
P H 0.239
C H 0.222
Y E 0.179
S H 0.215
D H 0.387
A H 0.724
F H 0.802
A H 0.813
K H 0.843
L H 0.827
L H 0.611
E H 0.467
S B 0.434
G S 0.458
D E 0.216
L E 0.259
S E 0.284
M H 0.170
S S 0.208
S E 0.274
I E 0.332
K A 0.332
V E 0.294
D G 0.246
G S 0.305
I B 0.303
R A 0.354
M E 0.428
S B 0.393
F H 0.462
Q H 0.826
N H 0.856
L H 0.892
L H 0.837
A H 0.900
K H 0.890
I H 0.871
C H 0.806
F H 0.674
H H 0.460
H E 0.228
H A 0.185
F E 0.297
S E 0.364
V E 0.366
V E 0.257
E E 0.311
R A 0.220
V B 0.405
D H 0.379
S H 0.345
C H 0.285
A H 0.192
S H 0.282
M H 0.420
Y H 0.238
S H 0.203
R E 0.158
S B 0.217
I H 0.129
Q D 0.329
G D 0.243
H B 0.476
H E 0.493
V E 0.605
C E 0.576
L E 0.642
L A 0.487
V B 0.417
K B 0.439
K H 0.295
G D 0.170
E H 0.173
N S 0.176
S E 0.324
V E 0.612
S E 0.517
V A 0.251
D S 0.172
G S 0.291
K B 0.211
C B 0.257
S S 0.255
D E 0.281
S H 0.668
T H 0.890
L H 0.885
L H 0.901
S H 0.928
N H 0.921
L H 0.894
L H 0.889
E H 0.915
E H 0.801
M H 0.715
K H 0.812
A H 0.805
T H 0.724
L H 0.589
A H 0.573
K H 0.396
C H 0.256
END