# List of top-scoring protein chains for t2k-100-30.dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b9kA 238 1.13e-01 1qtsA b.1.10.1 22315 d.105.1.1 40791 1kyfA 247 1.21e-01 1e42A 258 1.45e-01 1e42A b.1.10.1 22316 d.105.1.1 40792 1qtsA 247 1.61e-01 1qtsA b.1.10.1 22313 d.105.1.1 40789 1fzyA 149 1.43e+00 d.20.1.1 65072 1qi7A 253 2.09e+00 1qi7A d.165.1.1 42210 1cgt 684 3.35e+00 1cxlA b.1.1.5 21815 b.3.1.1 22484 b.71.1.1 27722 c.1.8.1 28709 1gpc 218 4.01e+00 1gpc b.40.4.7 25393 1erzA 303 4.75e+00 1erzA d.160.1.2 59498 1h91A 180 4.86e+00 b.60.1.1 60805 1gefA 123 5.23e+00 1gefA c.52.1.18 60465 21bi 153 5.37e+00 2i1b b.42.1.2 25542 1jdw 423 5.52e+00 1jdw d.126.1.2 41129 1i1b 153 5.56e+00 2i1b b.42.1.2 25537 1i4uA 181 5.77e+00 b.60.1.1 61732 1lylA 504 6.07e+00 1lylA b.40.4.1 25261 d.104.1.1 40717 1dt9A 437 6.15e+00 1dt9A c.55.4.2 33738 d.79.3.2 39815 d.91.1.1 40257 1qo0D 196 6.33e+00 1qo0D c.23.1.3 31125 1kpf 126 6.57e+00 1kpf d.13.1.1 37507 2i1b 153 6.64e+00 2i1b b.42.1.2 25538 1bhgA 613 7.01e+00 1bhgA b.1.4.1 22161 b.18.1.5 23766 c.1.8.3 28889 1je5A 206 7.26e+00 1je5A b.40.4.7 62909 1gg6B 131 7.46e+00 5ptp 1hfuA 503 8.02e+00 b.6.1.3 65827 b.6.1.3 65828 b.6.1.3 65829 1a65A 504 8.17e+00 1a65A b.6.1.3 23148 b.6.1.3 23149 b.6.1.3 23150 1smlA 269 8.64e+00 1smlA d.157.1.1 42053 1uch 230 9.09e+00 1uch d.3.1.6 37129 1gctA 245 9.18e+00 5ptp b.47.1.2 26021 1l7mA 211 9.38e+00 1f5sA 211 9.57e+00 1f5sA c.108.1.4 59656 1kgdA 180 9.67e+00 c.37.1.1 68582 1f15B 218 9.77e+00 1f15B b.10.1.2 23321 1mypA 108 1.05e+01 1d2vA a.93.1.2 18701 1j97A 211 1.08e+01 1f5sA c.108.1.4 62753 1skyE 473 1.09e+01 1skyE a.69.1.1 18314 b.49.1.1 26479 c.37.1.11 32359 1cdwA 179 1.11e+01 1ytbA d.129.1.1 41212 d.129.1.1 41213 1fit 147 1.16e+01 1fit d.13.1.1 37499 1d0cA 444 1.22e+01 d.174.1.1 64769 1mypB 108 1.29e+01 1mypB a.93.1.2 18702 1nseA 444 1.29e+01 1nseA d.174.1.1 42534 1thtA 305 1.31e+01 1thtA c.69.1.13 34711 9apiA 347 1.35e+01 1ovaA e.1.1.1 42630 1cwvA 492 1.36e+01 1cwvA b.1.14.1 22373 b.1.14.1 22374 b.1.14.1 22375 b.1.14.1 22376 d.169.1.3 42442 1ap8 213 1.38e+01 1ap8 d.86.1.1 40151 1i40A 175 1.46e+01 b.40.5.1 66024 1b12A 248 1.50e+01 1b12A b.87.1.2 28388 1lox 662 1.52e+01 1lox a.119.1.2 19238 b.12.1.1 23638 1qj2B 809 1.53e+01 1qj2B d.41.1.1 38589 d.133.1.1 41419 1a8y 367 1.61e+01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1k8wA 327 1.68e+01 d.58.35.2 68317 d.58.35.2 68318 1krhA 338 1.70e+01 1cxpA 104 1.77e+01 1d2vA a.93.1.2 18695 1d2vA 104 1.77e+01 1d2vA a.93.1.2 18697 1mhlA 108 1.79e+01 1d2vA a.93.1.2 18699 1hynP 379 1.81e+01 1hynP d.112.1.2 61408 8cho 125 1.85e+01 1opy d.17.4.3 38108 1gklA 297 1.91e+01 c.69.1.2 65250 1spuB 727 1.97e+01 1oacA b.30.2.1 24399 d.17.2.1 38025 d.17.2.1 38026 d.82.1.1 40012 1knqA 175 1.99e+01 1rl6A 177 2.00e+01 1rl6A d.141.1.1 41473 d.141.1.1 41474 1e69B 322 2.02e+01 1e69B c.37.1.12 32377 1emsA 440 2.04e+01 1emsA d.13.1.1 37520 d.160.1.1 42086 1thx 115 2.06e+01 1thx c.47.1.1 32732 1bh5A 183 2.11e+01 1qipA d.32.1.1 38476 1fnuA 221 2.13e+01 3seb b.40.2.2 25212 d.15.6.1 37801 1tf4A 605 2.13e+01 1tf4A a.102.1.2 18827 b.2.2.2 22393 1aogA 485 2.18e+01 3grs c.3.1.5 30517 c.3.1.5 30518 d.87.1.1 40190 2bc2A 227 2.19e+01 1a7tA d.157.1.1 42031 1kpeA 126 2.21e+01 1kpf d.13.1.1 37508 1ihkA 174 2.28e+01 1bfg b.42.1.1 62384 1earA 147 2.30e+01 b.107.1.1 64875 d.58.38.1 64876 1g4mA 393 2.32e+01 b.1.1.5 65143 b.1.1.5 65144 1semA 58 2.32e+01 1ckaA b.34.2.1 24544 1egnA 434 2.33e+01 1celA b.29.1.10 59411 1qorA 327 2.33e+01 1qorA b.35.1.2 24766 c.2.1.1 29782 6cel 434 2.34e+01 1celA b.29.1.10 24279 1qoxN 449 2.34e+01 1qoxN c.1.8.4 28978 1bjx 110 2.35e+01 1bjx c.47.1.2 32774 2bjxA 110 2.35e+01 1bjx c.47.1.2 32776 1hyeA 313 2.37e+01 2cmd c.2.1.5 61400 d.162.1.1 61401 1qipA 183 2.42e+01 1qipA d.32.1.1 38470 1celA 434 2.45e+01 1celA b.29.1.10 24280 1g96A 120 2.53e+01 1g96A d.17.1.2 60393 2pia 321 2.55e+01 2pia b.43.4.2 25663 c.25.1.2 31553 d.15.4.2 37704 1dykA 394 2.57e+01 1dykA b.29.1.4 24223 b.29.1.4 24224 2fibA 269 2.78e+01 3fib d.171.1.1 42457 1kypA 237 2.79e+01 1d6zA 727 2.80e+01 1oacA b.30.2.1 24394 d.17.2.1 38015 d.17.2.1 38016 d.82.1.1 40007 1gatA 60 2.88e+01 1gatA g.39.1.1 45106 1dqwA 267 2.89e+01 1dqwA c.1.2.3 28551 1obwA 175 2.91e+01 2prd b.40.5.1 25416 1h9oA 112 2.91e+01 1qadA d.93.1.1 60837 1jqiA 388 2.97e+01 a.29.3.1 67087 e.6.1.1 67088 2arcB 164 3.03e+01 2arcA b.82.4.1 28149 1qhfA 240 3.04e+01 1qhfA c.60.1.1 33960 1l9fA 389 3.13e+01 1el5A 389 3.13e+01 1b3mA c.3.1.2 30369 d.16.1.3 37937 2bc2B 227 3.13e+01 1a7tA d.157.1.1 42032 1eguA 731 3.19e+01 1eguA a.102.3.2 18850 b.24.1.1 23899 b.30.3.1 24423 1qadA 111 3.30e+01 1qadA d.93.1.1 40498 1msc 129 3.34e+01 1msc d.85.1.1 40039 2ms2A 129 3.35e+01 1msc d.85.1.1 40049 1kxgA 152 3.35e+01 3fib 249 3.39e+01 3fib d.171.1.1 42455 1f3uA 118 3.43e+01 1f3uA b.65.1.1 27521 1rgeA 96 3.44e+01 1rgeA d.1.1.1 36028 1bq3B 246 3.47e+01 1qhfA c.60.1.1 33979 1pii 452 3.48e+01 1pii c.1.2.4 28559 c.1.2.4 28563 1fib 269 3.56e+01 3fib d.171.1.1 42456 1ed5A 444 3.58e+01 1nseA d.174.1.1 42530 1f3aA 222 3.60e+01 1pgtA a.45.1.1 17701 c.47.1.5 32995 1ev2E 220 3.67e+01 1cvsC b.1.1.4 21738 b.1.1.4 21739 1qjgA 125 3.68e+01 1opy d.17.4.3 38102 1i88A 389 3.83e+01 c.95.1.2 66070 c.95.1.2 66071 1h80A 464 3.85e+01 b.80.1.8 65714 1d4xG 126 3.86e+01 1d0nA d.109.1.1 59109 1qouA 181 3.88e+01 1qouA b.17.1.1 23707 1ipwA 175 3.90e+01 2prd b.40.5.1 25427 3gatA 66 3.99e+01 1gatA g.39.1.1 45103