# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1kyfA 247 1.30e+00 1b9kA 238 1.39e+00 1qtsA b.1.10.1 22315 d.105.1.1 40791 1qtsA 247 1.76e+00 1qtsA b.1.10.1 22313 d.105.1.1 40789 1e42A 258 2.91e+00 1e42A b.1.10.1 22316 d.105.1.1 40792 1earA 147 4.26e+00 b.107.1.1 64875 d.58.38.1 64876 1fzyA 149 4.34e+00 d.20.1.1 65072 1eb0A 147 5.54e+00 b.107.1.1 64890 d.58.38.1 64891 1bhgA 613 5.97e+00 1bhgA b.1.4.1 22161 b.18.1.5 23766 c.1.8.3 28889 1b12A 248 6.08e+00 1b12A b.87.1.2 28388 1dt9A 437 6.57e+00 1dt9A c.55.4.2 33738 d.79.3.2 39815 d.91.1.1 40257 1acx 108 7.18e+00 2mcm b.1.7.1 22211 1kypA 237 7.90e+00 1uch 230 9.15e+00 1uch d.3.1.6 37129 1fit 147 9.35e+00 1fit d.13.1.1 37499 1qi7A 253 9.81e+00 1qi7A d.165.1.1 42210 1b3eA 330 9.91e+00 1nnt c.94.1.2 35897 2arcA 164 1.02e+01 2arcA b.82.4.1 28148 2arcB 164 1.23e+01 2arcA b.82.4.1 28149 1gefA 123 1.26e+01 1gefA c.52.1.18 60465 1thx 115 1.38e+01 1thx c.47.1.1 32732 1jqiA 388 1.38e+01 a.29.3.1 67087 e.6.1.1 67088 1je5A 206 1.41e+01 1je5A b.40.4.7 62909 1cgt 684 1.48e+01 1cxlA b.1.1.5 21815 b.3.1.1 22484 b.71.1.1 27722 c.1.8.1 28709 1skyE 473 1.49e+01 1skyE a.69.1.1 18314 b.49.1.1 26479 c.37.1.11 32359 1bjx 110 1.59e+01 1bjx c.47.1.2 32774 2bjxA 110 1.59e+01 1bjx c.47.1.2 32776 1kgdA 180 1.65e+01 c.37.1.1 68582 1h6rA 236 1.66e+01 d.22.1.1 65683 1k8wA 327 1.69e+01 d.58.35.2 68317 d.58.35.2 68318 1g4mA 393 1.78e+01 b.1.1.5 65143 b.1.1.5 65144 1lylA 504 1.80e+01 1lylA b.40.4.1 25261 d.104.1.1 40717 1ema 236 1.82e+01 1ema d.22.1.1 38339 1dtgA 334 1.93e+01 1nnt c.94.1.2 35896 1erzA 303 1.95e+01 1erzA d.160.1.2 59498 1hfuA 503 2.00e+01 b.6.1.3 65827 b.6.1.3 65828 b.6.1.3 65829 1semA 58 2.05e+01 1ckaA b.34.2.1 24544 1i4uA 181 2.15e+01 b.60.1.1 61732 1h91A 180 2.23e+01 b.60.1.1 60805 1gmpA 96 2.24e+01 1rgeA d.1.1.1 36036 1b3qA 379 2.25e+01 1b3qA a.30.2.1 16993 b.40.7.1 25454 d.122.1.3 41112 31bi 153 2.26e+01 2i1b b.42.1.2 25541 1qo0D 196 2.31e+01 1qo0D c.23.1.3 31125 1a8e 329 2.33e+01 1cb6A c.94.1.2 35888 21bi 153 2.36e+01 2i1b b.42.1.2 25542 1k3rA 268 2.42e+01 1qtnB 95 2.48e+01 1pauB 1ap8 213 2.57e+01 1ap8 d.86.1.1 40151 1hbp 183 2.65e+01 1aqb b.60.1.1 27079 2sfa 191 2.69e+01 1qq4A b.47.1.1 25815 1i1b 153 2.79e+01 2i1b b.42.1.2 25537 1rgeA 96 2.83e+01 1rgeA d.1.1.1 36028 1f1sA 814 2.87e+01 a.102.3.2 64928 b.1.1.5 64929 b.24.1.1 64930 b.30.3.1 64931 1cdwA 179 2.88e+01 1ytbA d.129.1.1 41212 d.129.1.1 41213 1emsA 440 2.98e+01 1emsA d.13.1.1 37520 d.160.1.1 42086 1tig 94 3.00e+01 1tig d.68.1.1 39566 1qu6A 179 3.11e+01 1qu6A d.50.1.1 38784 d.50.1.1 38785 1a65A 504 3.20e+01 1a65A b.6.1.3 23148 b.6.1.3 23149 b.6.1.3 23150 1ag9A 175 3.20e+01 1rcf c.23.5.1 31178 1nseA 444 3.25e+01 1nseA d.174.1.1 42534 1mypA 108 3.27e+01 1d2vA a.93.1.2 18701 1d0cA 444 3.28e+01 d.174.1.1 64769 1rl6A 177 3.29e+01 1rl6A d.141.1.1 41473 d.141.1.1 41474 1f15B 218 3.30e+01 1f15B b.10.1.2 23321 2ms2A 129 3.33e+01 1msc d.85.1.1 40049 1ed5A 444 3.38e+01 1nseA d.174.1.1 42530 1mypB 108 3.46e+01 1mypB a.93.1.2 18702 1kpf 126 3.51e+01 1kpf d.13.1.1 37507 1qoxN 449 3.51e+01 1qoxN c.1.8.4 28978 1d1vA 444 3.55e+01 1nseA d.174.1.1 59101 2i1b 153 3.62e+01 2i1b b.42.1.2 25538 1efuB 282 3.62e+01 1efuB a.5.2.2 58975 d.43.1.1 58976 d.43.1.1 38677 1smlA 269 3.65e+01 1smlA d.157.1.1 42053 1mhlA 108 3.66e+01 1d2vA a.93.1.2 18699 1lox 662 3.66e+01 1lox a.119.1.2 19238 b.12.1.1 23638 1cxpA 104 3.73e+01 1d2vA a.93.1.2 18695 1d2vA 104 3.73e+01 1d2vA a.93.1.2 18697 1e4fT 419 3.90e+01 1e4fT c.55.1.1 33453 c.55.1.1 33454