PFRMAT SS
TARGET T0133
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0133.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 13
METHOD
MODEL 1
M E 0.172
N E 0.173
S B 0.187
I I 0.187
K H 0.299
N S 0.341
V B 0.392
P B 0.248
A H 0.232
R H 0.246
V A 0.252
L H 0.240
S H 0.191
R B 0.173
R C 0.325
P G 0.277
G S 0.461
H B 0.274
S H 0.207
L H 0.480
E H 0.558
A H 0.699
E H 0.697
R H 0.794
E H 0.819
Q H 0.826
F H 0.791
D H 0.770
K H 0.848
T H 0.863
Q H 0.860
A H 0.913
I H 0.939
S H 0.939
I H 0.876
S H 0.895
K H 0.801
A H 0.754
I H 0.504
N S 0.221
S E 0.265
Q H 0.259
E E 0.165
A C 0.369
P B 0.377
V B 0.336
K B 0.291
E H 0.233
K H 0.295
H H 0.227
A H 0.419
R H 0.643
R H 0.552
I H 0.632
I H 0.439
L H 0.460
G H 0.281
T B 0.234
H H 0.400
H H 0.409
E H 0.436
K H 0.561
G H 0.572
A H 0.621
F H 0.803
T H 0.831
F H 0.841
W H 0.726
S H 0.693
Y H 0.632
A H 0.280
I H 0.303
G S 0.277
L B 0.501
P B 0.263
L B 0.203
P H 0.349
S S 0.331
S B 0.258
S H 0.482
I H 0.411
L H 0.566
S H 0.834
W H 0.895
K H 0.916
F H 0.930
C H 0.931
H H 0.928
V H 0.923
L H 0.880
H H 0.861
K H 0.803
V H 0.728
L H 0.520
R H 0.268
D G 0.218
G S 0.510
H E 0.413
P H 0.496
N S 0.502
V H 0.325
L H 0.565
H H 0.643
D H 0.693
C H 0.626
Q H 0.500
R H 0.492
Y H 0.324
R H 0.491
S H 0.545
N H 0.650
I H 0.720
R H 0.763
E H 0.652
I H 0.548
G H 0.561
D H 0.475
L H 0.329
W H 0.230
G H 0.208
H S 0.168
L S 0.181
R S 0.191
D H 0.170
Q H 0.250
Y H 0.284
G H 0.386
H H 0.713
L H 0.795
V H 0.885
N H 0.933
I H 0.933
Y H 0.923
T H 0.928
K H 0.941
L H 0.931
L H 0.876
L H 0.850
T H 0.873
K H 0.747
I H 0.632
S H 0.773
F H 0.638
H H 0.414
L H 0.424
K H 0.235
H E 0.343
P I 0.269
Q S 0.296
F B 0.233
P B 0.159
A S 0.248
G E 0.179
L E 0.225
E E 0.298
V E 0.205
T B 0.312
D H 0.355
E H 0.452
V H 0.272
L B 0.252
E H 0.287
K H 0.344
A H 0.318
A E 0.160
G H 0.233
T S 0.237
D E 0.392
V H 0.521
N S 0.308
N S 0.186
I H 0.323
F H 0.367
Q H 0.376
L H 0.467
T H 0.339
V H 0.384
E H 0.295
M H 0.642
F H 0.795
D H 0.764
Y H 0.686
M H 0.667
D H 0.744
C S 0.510
E H 0.686
L H 0.868
K H 0.800
L H 0.888
S H 0.937
E H 0.932
S H 0.948
V H 0.921
F H 0.895
R H 0.892
Q H 0.792
L H 0.414
N H 0.301
T S 0.242
A B 0.213
I H 0.188
A H 0.198
V E 0.177
S E 0.228
Q S 0.239
M B 0.286
S H 0.309
S H 0.245
G S 0.631
Q B 0.346
C E 0.418
R E 0.274
L H 0.405
A H 0.550
P H 0.724
L H 0.768
I H 0.885
Q H 0.920
V H 0.927
I H 0.880
Q H 0.842
D H 0.765
C H 0.458
S H 0.418
H H 0.762
L H 0.791
Y H 0.896
H H 0.931
Y H 0.950
T H 0.953
V H 0.944
K H 0.940
L H 0.945
M H 0.866
F H 0.837
K H 0.814
L H 0.642
H H 0.475
S H 0.434
C S 0.446
L C 0.374
P B 0.452
A H 0.516
D H 0.700
T H 0.749
L H 0.676
Q H 0.735
G H 0.818
H H 0.744
R H 0.828
D H 0.852
R H 0.876
F H 0.854
H H 0.912
E H 0.934
Q H 0.865
F H 0.876
H H 0.885
S H 0.875
L H 0.788
R H 0.856
N H 0.889
F H 0.796
F H 0.686
R H 0.775
R H 0.476
A I 0.306
S H 0.682
D S 0.550
M H 0.282
L H 0.689
Y H 0.519
F H 0.536
K H 0.670
R H 0.564
L H 0.372
I E 0.451
Q E 0.342
I E 0.391
P E 0.271
R B 0.306
L B 0.384
P B 0.315
E H 0.196
G C 0.300
P B 0.397
P B 0.200
N E 0.261
F S 0.311
L B 0.349
R B 0.395
A H 0.445
S H 0.515
A H 0.358
L H 0.396
A H 0.560
E H 0.520
H S 0.364
I E 0.197
K C 0.340
P B 0.363
V B 0.445
V E 0.418
V E 0.425
I B 0.321
P B 0.397
E H 0.179
E B 0.291
A B 0.314
P B 0.163
E B 0.203
E H 0.171
END