# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hf8A 289 2.95e-13 1hg5A a.118.10.1 19219 1hg5A 289 5.78e-13 1hg5A a.118.10.1 19221 1eyhA 144 1.13e+00 1eduA a.118.9.1 19214 1xikA 375 1.37e+00 1xikA a.25.1.2 16784 1eduA 149 1.52e+00 1eduA a.118.9.1 19215 1gw5A 621 1.55e+00 3hmgB 175 1.76e+00 1hgeB h.3.1.1 45704 1hgeB 175 1.90e+00 1hgeB h.3.1.1 45680 1dt6A 473 2.00e+00 1dt6A a.104.1.1 18977 2viuB 175 2.45e+00 1hgeB h.3.1.1 45676 1ribA 375 2.52e+00 1xikA a.25.1.2 16788 1jsdB 176 2.67e+00 h.3.1.1 63259 1h5uA 842 2.70e+00 1a8i c.87.1.4 60655 1c8kA 842 2.77e+00 1a8i c.87.1.4 35491 1jqcA 375 3.19e+00 1xikA a.25.1.2 63229 1a8i 842 3.24e+00 1a8i c.87.1.4 35490 1ea1A 455 3.50e+00 1ea1A a.104.1.1 18970 1e9xA 455 3.52e+00 1ea1A a.104.1.1 18969 1ku2A 241 3.63e+00 1gpb 842 5.17e+00 1a8i c.87.1.4 35478 1b5l 172 5.27e+00 1b5l a.26.1.3 16900 1hleA 345 5.35e+00 1ovaA e.1.1.1 42618 1jb9A 316 7.57e+00 1fnc b.43.4.2 62840 c.25.1.1 62841 1j77A 209 7.60e+00 1j77A a.132.1.2 62674 1jr3A 373 8.71e+00 a.80.1.1 63245 c.37.1.13 63246 2frvB 536 8.95e+00 1h2rL e.18.1.1 43291 1bkdS 439 9.54e+00 1bkdS a.117.1.1 19111 1bzyA 217 9.73e+00 1qk3A c.61.1.1 34071 1jmxA 494 1.00e+01 a.3.1.7 66901 a.3.1.7 66902 b.1.1.6 66903 b.1.1.6 66904 b.61.4.1 66905 1ej3A 191 1.01e+01 1ej3A a.39.1.5 17259 1ew6B 137 1.01e+01 1ewaA a.1.1.2 15638 1h2aL 567 1.05e+01 1h2rL e.18.1.1 43299 1i19A 561 1.10e+01 1i19A d.58.32.3 61522 d.145.1.1 61523 1fj2A 232 1.11e+01 1auoA c.69.1.14 34720 1gk4D 84 1.17e+01 1ew6A 137 1.26e+01 1ewaA a.1.1.2 15637 1d9cA 121 1.29e+01 1d9cA a.26.1.3 16901 1he2A 206 1.30e+01 1he2A c.2.1.2 60966 1gk4A 84 1.37e+01 1ap7 168 1.42e+01 1bd8 a.118.2.1 19170 1f0yA 302 1.47e+01 2hdhA a.100.1.3 18793 c.2.1.6 30197 1auoA 218 1.47e+01 1auoA c.69.1.14 34716 1l58 164 1.50e+01 1l92 d.2.1.3 36635 1phk 298 1.53e+01 1cdkA d.144.1.1 41635 1eo0A 77 1.55e+01 1eo0A a.48.3.1 17790 7aatA 401 1.55e+01 1ajsA c.67.1.1 34250 2hdhA 293 1.59e+01 2hdhA a.100.1.3 18795 c.2.1.6 30199 1c9kA 180 1.60e+01 1c9kB c.37.1.11 32363 1sfcA 96 1.68e+01 1sfcA h.1.15.1 45643 1dofA 403 1.71e+01 1c3cA a.127.1.1 19429 1gk4C 84 1.81e+01 119l 164 1.81e+01 1l92 d.2.1.3 36622 1cbuA 180 1.82e+01 1c9kB c.37.1.11 32360 1aurA 218 1.86e+01 1auoA c.69.1.14 34718 1h2rL 534 1.96e+01 1h2rL e.18.1.1 43298 2prgC 88 2.03e+01 2prgC a.137.6.1 19644 7a3hA 303 2.06e+01 7a3hA c.1.8.3 28817 1g4yB 101 2.09e+01 1g4yB f.2.1.11 60251 1jvpP 298 2.10e+01 d.144.1.1 67371 1theA 260 2.11e+01 1theB d.3.1.1 37056 1theB 260 2.13e+01 1theB d.3.1.1 37057 1sctB 151 2.23e+01 3sdhA a.1.1.2 15003 1c9kB 180 2.25e+01 1c9kB c.37.1.11 32364 1l92 164 2.30e+01 1l92 d.2.1.3 36629 1dseA 292 2.31e+01 1ryc a.93.1.1 59130 1eemA 241 2.32e+01 1eemA a.45.1.1 17717 c.47.1.5 33011 2cyp 294 2.43e+01 1ryc a.93.1.1 18600 1gqeA 365 2.44e+01 1f4qA 165 2.45e+01 1alvA a.39.1.7 17360 1sfcE 96 2.54e+01 1sfcE h.1.15.1 45647 1a3h 300 2.62e+01 7a3hA c.1.8.3 28819 1jdrA 294 2.64e+01 1ryc a.93.1.1 62908 1k3sA 113 2.67e+01 d.198.1.1 68120 1e4fT 419 2.69e+01 1e4fT c.55.1.1 33453 c.55.1.1 33454 1lbd 282 2.75e+01 1lbd a.123.1.1 19279 1qk4A 233 2.78e+01 1qk3A c.61.1.1 34037 1hdoA 206 2.86e+01 1he2A c.2.1.2 60965 1pprM 312 2.91e+01 1pprM a.131.1.1 19502 a.131.1.1 19503 1jkw 323 3.01e+01 1jkw a.74.1.1 18356 a.74.1.1 18357 1cqeA 580 3.03e+01 1cqeA a.93.1.2 18703 g.3.11.1 44246 1eg3A 261 3.09e+01 1eg3A a.39.1.7 17376 a.39.1.7 17377 b.72.1.1 27805 1b4cA 92 3.18e+01 1b4cA a.39.1.2 17169 1qa7A 217 3.19e+01 1havA b.47.1.4 26425 1i1iP 681 3.28e+01 1i1iP d.92.1.5 40297 1eziA 228 3.28e+01 1eyrA c.68.1.3 34512 1ntcA 91 3.30e+01 1ntcA a.105.1.1 19004 1sw6A 327 3.34e+01 1sw6A a.118.2.1 19176 1hw1A 239 3.35e+01 1e2xA a.4.5.6 16111 a.78.1.1 18441 1ds4A 292 3.43e+01 1ryc a.93.1.1 59129 1frvB 536 3.59e+01 1h2rL e.18.1.1 43296 1e2xA 243 3.60e+01 1e2xA a.4.5.6 16113 a.78.1.1 18443 1k94A 165 3.77e+01 a.39.1.7 68333 1hmpA 217 3.84e+01 1qk3A c.61.1.1 34075 1fdyA 297 3.96e+01 1nal3 c.1.10.1 29071 1g5yA 238 4.00e+01 1lbd a.123.1.1 60294