# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hg5A 289 3.49e-12 1hg5A a.118.10.1 19221 1hf8A 289 3.66e-12 1hg5A a.118.10.1 19219 1eduA 149 3.38e-01 1eduA a.118.9.1 19215 1eyhA 144 3.53e-01 1eduA a.118.9.1 19214 1dt6A 473 1.12e+00 1dt6A a.104.1.1 18977 1xikA 375 1.35e+00 1xikA a.25.1.2 16784 1e9xA 455 1.43e+00 1ea1A a.104.1.1 18969 1ea1A 455 1.87e+00 1ea1A a.104.1.1 18970 1jqcA 375 1.97e+00 1xikA a.25.1.2 63229 1ribA 375 2.05e+00 1xikA a.25.1.2 16788 1ku2A 241 2.15e+00 1h2rL 534 2.47e+00 1h2rL e.18.1.1 43298 1i19A 561 2.53e+00 1i19A d.58.32.3 61522 d.145.1.1 61523 1gk4D 84 3.52e+00 1gk4A 84 3.82e+00 1ej3A 191 4.02e+00 1ej3A a.39.1.5 17259 1gw5A 621 4.07e+00 1gk4C 84 4.69e+00 1h2aL 567 5.93e+00 1h2rL e.18.1.1 43299 1jmxA 494 6.53e+00 a.3.1.7 66901 a.3.1.7 66902 b.1.1.6 66903 b.1.1.6 66904 b.61.4.1 66905 1jr3A 373 7.36e+00 a.80.1.1 63245 c.37.1.13 63246 2prgC 88 9.04e+00 2prgC a.137.6.1 19644 2frvB 536 9.38e+00 1h2rL e.18.1.1 43291 1j77A 209 9.48e+00 1j77A a.132.1.2 62674 1e3dB 542 1.06e+01 1h2rL e.18.1.1 59189 1cqeA 580 1.08e+01 1cqeA a.93.1.2 18703 g.3.11.1 44246 1nal3 297 1.24e+01 1nal3 1bpoA 494 1.27e+01 1bpoA a.118.1.4 19143 b.69.6.1 27670 1fdyA 297 1.31e+01 1nal3 c.1.10.1 29071 1g4yB 101 1.39e+01 1g4yB f.2.1.11 60251 3fapB 94 1.39e+01 1nsgB a.24.7.1 16612 119l 164 1.44e+01 1l92 d.2.1.3 36622 1jb9A 316 1.45e+01 1fnc b.43.4.2 62840 c.25.1.1 62841 1d9cA 121 1.50e+01 1d9cA a.26.1.3 16901 1hleA 345 1.52e+01 1ovaA e.1.1.1 42618 1pprM 312 1.53e+01 1pprM a.131.1.1 19502 a.131.1.1 19503 1l58 164 1.53e+01 1l92 d.2.1.3 36635 1ortA 335 1.56e+01 1othA c.78.1.1 35204 c.78.1.1 35205 1e1oA 504 1.68e+01 1lylA b.40.4.1 25258 d.104.1.1 40714 1hgeB 175 1.68e+01 1hgeB h.3.1.1 45680 3pghA 587 1.84e+01 1cqeA a.93.1.2 18726 g.3.11.1 44269 1e2xA 243 1.89e+01 1e2xA a.4.5.6 16113 a.78.1.1 18443 1nal1 297 1.90e+01 1nal3 1dm5A 315 1.93e+01 1avc a.65.1.1 18186 1b5l 172 1.94e+01 1b5l a.26.1.3 16900 1gotG 73 1.95e+01 1tbgE a.137.3.1 19629 3hmgB 175 1.99e+01 1hgeB h.3.1.1 45704 1nsgB 94 2.05e+01 1nsgB a.24.7.1 16613 2viuB 175 2.11e+01 1hgeB h.3.1.1 45676 1kdxA 81 2.13e+01 1kdxA a.12.1.1 16375 1k3rA 268 2.16e+01 155c 135 2.17e+01 1ycc a.3.1.1 15900 1ap7 168 2.21e+01 1bd8 a.118.2.1 19170 1jvpP 298 2.29e+01 d.144.1.1 67371 1lylA 504 2.39e+01 1lylA b.40.4.1 25261 d.104.1.1 40717 1qqeA 292 2.46e+01 1qqeA a.118.8.1 19210 1ignA 246 2.49e+01 1ignA a.4.1.6 16048 a.4.1.6 16049 1jfeA 491 2.58e+01 h.1.8.1 66626 1frvB 536 2.62e+01 1h2rL e.18.1.1 43296 1taq 832 2.65e+01 1taq a.60.7.1 18082 c.53.1.2 33352 c.55.3.5 33698 e.8.1.1 42991 2hdhA 293 2.69e+01 2hdhA a.100.1.3 18795 c.2.1.6 30199 1dofA 403 2.75e+01 1c3cA a.127.1.1 19429 1cbuA 180 2.78e+01 1c9kB c.37.1.11 32360 1f0yA 302 2.79e+01 2hdhA a.100.1.3 18793 c.2.1.6 30197 1eumA 165 2.87e+01 1eumA a.25.1.1 59507 1fsgA 233 2.98e+01 1qk3A c.61.1.1 34029 1k3sA 113 3.06e+01 d.198.1.1 68120 153l 185 3.07e+01 153l d.2.1.5 36984 1eo0A 77 3.10e+01 1eo0A a.48.3.1 17790 1bzyA 217 3.17e+01 1qk3A c.61.1.1 34071 1gqeA 365 3.18e+01 1qk4A 233 3.23e+01 1qk3A c.61.1.1 34037 1hw1A 239 3.42e+01 1e2xA a.4.5.6 16111 a.78.1.1 18441 1hd8A 363 3.49e+01 b.105.1.1 65803 e.3.1.1 65804 1sfcA 96 3.56e+01 1sfcA h.1.15.1 45643 2hfh 109 3.60e+01 2hfh a.4.5.14 16145 1rfbA 119 3.63e+01 1d9cA a.26.1.3 16905 2wsyA 268 3.63e+01 2tysA c.1.2.4 28588 1l92 164 3.67e+01 1l92 d.2.1.3 36629 1a8h 500 3.70e+01 1a8h a.27.1.1 16922 c.26.1.1 31589 1ccg 291 3.71e+01 1ryc a.93.1.1 18627 1kxu 333 3.78e+01 1jkw a.74.1.1 18358 a.74.1.1 18359 1eemA 241 3.78e+01 1eemA a.45.1.1 17717 c.47.1.5 33011 1ntcA 91 3.79e+01 1ntcA a.105.1.1 19004 1auoA 218 3.85e+01 1auoA c.69.1.14 34716 1b9xB 68 3.86e+01 1tbgE a.137.3.1 19638 1c9kB 180 3.89e+01 1c9kB c.37.1.11 32364 1gumA 222 3.90e+01 1pgtA a.45.1.1 17683 c.47.1.5 32977 1he2A 206 3.93e+01 1he2A c.2.1.2 60966