# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hf8A 289 5.94e-13 1hg5A a.118.10.1 19219 1hg5A 289 6.38e-13 1hg5A a.118.10.1 19221 1eduA 149 5.50e-02 1eduA a.118.9.1 19215 1eyhA 144 5.80e-02 1eduA a.118.9.1 19214 1dt6A 473 3.15e-01 1dt6A a.104.1.1 18977 1jkw 323 3.63e-01 1jkw a.74.1.1 18356 a.74.1.1 18357 1ku2A 241 3.67e-01 1kxu 333 8.00e-01 1jkw a.74.1.1 18358 a.74.1.1 18359 1frvB 536 9.70e-01 1h2rL e.18.1.1 43296 2frvB 536 1.05e+00 1h2rL e.18.1.1 43291 1gw5A 621 1.26e+00 1h2rL 534 1.30e+00 1h2rL e.18.1.1 43298 1i19A 561 1.87e+00 1i19A d.58.32.3 61522 d.145.1.1 61523 1ea1A 455 2.30e+00 1ea1A a.104.1.1 18970 1xikA 375 2.38e+00 1xikA a.25.1.2 16784 1bkdS 439 2.96e+00 1bkdS a.117.1.1 19111 1ej3A 191 3.27e+00 1ej3A a.39.1.5 17259 3hmgB 175 3.55e+00 1hgeB h.3.1.1 45704 1j77A 209 3.57e+00 1j77A a.132.1.2 62674 2viuB 175 3.83e+00 1hgeB h.3.1.1 45676 1hgeB 175 3.94e+00 1hgeB h.3.1.1 45680 1jqcA 375 3.96e+00 1xikA a.25.1.2 63229 1ribA 375 4.42e+00 1xikA a.25.1.2 16788 1jsdB 176 4.92e+00 h.3.1.1 63259 1kkoA 413 5.10e+00 c.1.11.2 68675 d.54.1.1 68676 1e9xA 455 5.35e+00 1ea1A a.104.1.1 18969 1gumA 222 5.35e+00 1pgtA a.45.1.1 17683 c.47.1.5 32977 1cem 363 6.17e+00 1cem a.102.1.2 18826 1rfbA 119 6.27e+00 1d9cA a.26.1.3 16905 1kwfA 363 6.35e+00 1eumA 165 7.09e+00 1eumA a.25.1.1 59507 1bzyA 217 7.14e+00 1qk3A c.61.1.1 34071 1h2aL 567 7.44e+00 1h2rL e.18.1.1 43299 1qlaC 256 7.83e+00 1qlaC f.2.1.9 43722 119l 164 7.91e+00 1l92 d.2.1.3 36622 1jmxA 494 8.04e+00 a.3.1.7 66901 a.3.1.7 66902 b.1.1.6 66903 b.1.1.6 66904 b.61.4.1 66905 1gk4A 84 8.07e+00 1ew6A 137 8.08e+00 1ewaA a.1.1.2 15637 1ewaA 137 8.08e+00 1ewaA a.1.1.2 15639 1gk4D 84 8.43e+00 2prgC 88 8.50e+00 2prgC a.137.6.1 19644 1dm5A 315 8.79e+00 1avc a.65.1.1 18186 1hleA 345 9.28e+00 1ovaA e.1.1.1 42618 1l58 164 9.77e+00 1l92 d.2.1.3 36635 1cot 129 9.79e+00 1ycc a.3.1.1 15899 1gk4C 84 9.99e+00 1qa7A 217 1.03e+01 1havA b.47.1.4 26425 1f5qB 252 1.07e+01 1f5qB a.74.1.1 18362 a.74.1.1 18363 1ew6B 137 1.11e+01 1ewaA a.1.1.2 15638 1rlr 761 1.12e+01 1rlr a.98.1.1 18753 c.7.1.2 30679 1g4yB 101 1.17e+01 1g4yB f.2.1.11 60251 1fdyA 297 1.19e+01 1nal3 c.1.10.1 29071 1havA 217 1.24e+01 1havA b.47.1.4 26423 1a0p 290 1.26e+01 1a0p a.60.9.1 18105 d.163.1.1 42165 1e9rA 437 1.27e+01 c.37.1.11 64827 1dofA 403 1.28e+01 1c3cA a.127.1.1 19429 3fapB 94 1.30e+01 1nsgB a.24.7.1 16612 1b5l 172 1.31e+01 1b5l a.26.1.3 16900 1fx8A 281 1.33e+01 f.2.1.5 43651 1ivhA 394 1.33e+01 3mdeA a.29.3.1 16608 e.6.1.1 42869 1jmtA 104 1.41e+01 d.58.7.3 63180 1gotG 73 1.43e+01 1tbgE a.137.3.1 19629 1gpb 842 1.47e+01 1a8i c.87.1.4 35478 1qq8A 214 1.48e+01 1qq8A a.132.1.1 19508 1l92 164 1.52e+01 1l92 d.2.1.3 36629 1c8kA 842 1.52e+01 1a8i c.87.1.4 35491 1e3dB 542 1.56e+01 1h2rL e.18.1.1 59189 1h5uA 842 1.56e+01 1a8i c.87.1.4 60655 1i5pA 633 1.58e+01 1i5pA b.18.1.3 61817 b.77.2.1 61818 f.1.3.1 61819 1jr3A 373 1.66e+01 a.80.1.1 63245 c.37.1.13 63246 1taq 832 1.69e+01 1taq a.60.7.1 18082 c.53.1.2 33352 c.55.3.5 33698 e.8.1.1 42991 1nal3 297 1.71e+01 1nal3 1ap7 168 1.73e+01 1bd8 a.118.2.1 19170 1e2xA 243 1.75e+01 1e2xA a.4.5.6 16113 a.78.1.1 18443 1g3jA 532 1.79e+01 3bct a.118.1.1 19114 1e1oA 504 1.79e+01 1lylA b.40.4.1 25258 d.104.1.1 40714 1cviA 342 1.79e+01 1cviA c.60.1.2 33989 1hmpA 217 1.90e+01 1qk3A c.61.1.1 34075 1qk4A 233 1.93e+01 1qk3A c.61.1.1 34037 1fsgA 233 1.97e+01 1qk3A c.61.1.1 34029 1ntcA 91 2.01e+01 1ntcA a.105.1.1 19004 1ad6 185 2.04e+01 1guxA a.74.1.3 18390 1imvA 398 2.09e+01 e.1.1.1 62591 1bj5 585 2.11e+01 1bj5 a.126.1.1 19369 a.126.1.1 19370 a.126.1.1 19371 1jdhA 529 2.23e+01 a.118.1.1 66549 1k3rA 268 2.26e+01 1nal1 297 2.26e+01 1nal3 3vtk 343 2.29e+01 1qhiA c.37.1.1 31884 155c 135 2.31e+01 1ycc a.3.1.1 15900 1fps 348 2.40e+01 1uby a.128.1.1 19436 1pprM 312 2.46e+01 1pprM a.131.1.1 19502 a.131.1.1 19503 3aig 202 2.49e+01 1atlA d.92.1.9 40321 2ligA 164 2.51e+01 1vls a.24.2.1 16530 1kiyA 374 2.56e+01 1b9xB 68 2.56e+01 1tbgE a.137.3.1 19638 1h99A 224 2.60e+01 a.142.1.1 60814 a.142.1.1 60815 1qa7B 217 2.62e+01 1havA b.47.1.4 26426 1kdxA 81 2.63e+01 1kdxA a.12.1.1 16375 1ha2A 585 2.64e+01 1bj5 a.126.1.1 60866 a.126.1.1 60867 a.126.1.1 60868 1nsgB 94 2.68e+01 1nsgB a.24.7.1 16613 1i7wA 538 2.68e+01 3bct a.118.1.1 61909 1sctB 151 2.69e+01 3sdhA a.1.1.2 15003 1sfcA 96 2.73e+01 1sfcA h.1.15.1 45643 1jli 112 2.77e+01 1jli a.26.1.2 16884 1bpoA 494 2.81e+01 1bpoA a.118.1.4 19143 b.69.6.1 27670 1lylA 504 2.88e+01 1lylA b.40.4.1 25261 d.104.1.1 40717 1jmuB 666 2.92e+01 1ldfA 281 2.92e+01 5eau 548 2.97e+01 5eat a.102.4.1 18851 a.128.1.3 19443 1hw1A 239 3.00e+01 1e2xA a.4.5.6 16111 a.78.1.1 18441 1sfcE 96 3.05e+01 1sfcE h.1.15.1 45647 1theB 260 3.22e+01 1theB d.3.1.1 37057 1msk 331 3.23e+01 1msk d.173.1.1 42495 1ht9A 76 3.25e+01 4icb a.39.1.1 61252 1a8i 842 3.27e+01 1a8i c.87.1.4 35490 1hq3C 136 3.30e+01 1aoiA a.22.1.1 16454 1aoa 275 3.31e+01 1aoa a.40.1.1 17396 a.40.1.1 17397 1hz4A 373 3.31e+01 a.118.8.2 65960 1eo0A 77 3.32e+01 1eo0A a.48.3.1 17790 1i4sA 147 3.34e+01 a.149.1.1 66026 1ji7A 89 3.37e+01 1i1iP 681 3.40e+01 1i1iP d.92.1.5 40297 1j5wA 298 3.44e+01 1jfaA 374 3.44e+01 a.128.1.5 66622 1kktA 511 3.44e+01 a.102.2.1 68687 1jvpP 298 3.45e+01 d.144.1.1 67371 2hpaA 342 3.47e+01 1cviA c.60.1.2 33985 1i50B 1224 3.48e+01 e.29.1.2 61755 1agnA 373 3.48e+01 2ohxA b.35.1.2 24737 c.2.1.1 29753 1ds4A 292 3.61e+01 1ryc a.93.1.1 59129 1e4fT 419 3.64e+01 1e4fT c.55.1.1 33453 c.55.1.1 33454 1jb9A 316 3.67e+01 1fnc b.43.4.2 62840 c.25.1.1 62841 3icb 75 3.69e+01 4icb a.39.1.1 17147 1i4yA 114 3.75e+01 2mhr a.24.4.1 61738 1theA 260 3.82e+01 1theB d.3.1.1 37056 1jx2B 315 3.83e+01 c.37.1.8 67404 1jw2A 72 3.84e+01 a.23.5.1 67372 1fx2A 235 3.91e+01 1fx2A d.58.29.1 39430 1f0yA 302 3.97e+01 2hdhA a.100.1.3 18793 c.2.1.6 30197