/projects/compbio/experiments/casp5/scripts-human/create_summary_html \ T0132 file:/projects/compbio/experiments/casp5/t0132/selected > /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_master_table_head_summary_html \ >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_section_head_summary_html \ Inputs >> /projects/compbio/experiments/casp5/t0132/selected/summary.html echo Received sequence T0132.a2m Received sequence T0132.a2m /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Submitted sequence(s)" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.a2m T0132.a2m >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Provided documentation" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.doc.html T0132.doc.html >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "SAM_T02 multiple alignment in a2m format" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.a2m.gz T0132.t2k.a2m.gz >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "SAM_T02 multiple alignment in pretty html format" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.pa.html T0132.t2k.pa.html >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "SAM_T02 target hidden Markov model" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod T0132.t2k-w0.5.mod >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/end_section_summary_html \ >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_section_head_summary_html \ "Secondary Structure Prediction" >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "DSSP EBGHSTL structure prediction CASP format" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl T0132.t2k.dssp-ebghstl >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "DSSP EBGHSTL structure prediction RDB format" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.rdb T0132.t2k.dssp-ebghstl.rdb >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "DSSP EBGHSTL structure prediction sequence format" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq T0132.t2k.dssp-ebghstl.seq >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Stride EBGHTL structure prediction CASP format" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl T0132.t2k.stride-ebghtl >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Stride EBGHTL structure prediction RDB format" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.rdb T0132.t2k.stride-ebghtl.rdb >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Stride EBGHTL structure prediction sequence format" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq T0132.t2k.stride-ebghtl.seq >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Str structure prediction CASP format" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str T0132.t2k.str >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Str structure prediction RDB format" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.rdb T0132.t2k.str.rdb >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Str structure prediction sequence format" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq T0132.t2k.str.seq >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Alpha angle prediction RDB format" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.alpha.rdb T0132.t2k.alpha.rdb >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Alpha angle prediction sequence format" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.alpha.seq T0132.t2k.alpha.seq >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "DSSP 3-value prediction RDB format" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp_ehl2.rdb T0132.t2k.dssp_ehl2.rdb >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/end_section_summary_html \ >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_section_head_summary_html \ "Sequence Logos" >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "SAM_T02 multiple alignment in sequence logo format" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.w0.5-logo.eps T0132.t2k.w0.5-logo.eps >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "DSSP EBGHSTL structure prediction in sequence logo format" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl-logo.eps T0132.t2k.dssp-ebghstl-logo.eps >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Stride EBGHTL structure prediction in sequence logo format" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl-logo.eps T0132.t2k.stride-ebghtl-logo.eps >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Str structure prediction in sequence logo format" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str-logo.eps T0132.t2k.str-logo.eps >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Alpha angle prediction in sequence logo format" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.alpha-logo.eps T0132.t2k.alpha-logo.eps >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "DSSP 3-value prediction in sequence logo format" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp_ehl2-logo.eps T0132.t2k.dssp_ehl2-logo.eps >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/end_section_summary_html \ >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_section_head_summary_html \ "Target model scores" >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Annotated amino acid/100-30-dssp-ebghstl two-track target model scores" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-dssp-ebghstl-scores.html \ T0132.t2k-100-30-dssp-ebghstl-scores.html >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Annotated amino acid/100-30-stride-ebghtl two-track target model scores" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-stride-ebghtl-scores.html \ T0132.t2k-100-30-stride-ebghtl-scores.html >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Annotated amino acid/100-30-str two-track target model scores" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-str-scores.html \ T0132.t2k-100-30-str-scores.html >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Annotated amino acid/100-30-alpha two-track target model scores" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-alpha-scores.html \ T0132.t2k-100-30-alpha-scores.html >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Annotated amino acid/100-30-dssp_ehl2 two-track target model scores" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-dssp_ehl2-scores.html \ T0132.t2k-100-30-dssp_ehl2-scores.html >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Annotated amino acid single-track target model scores of PDB" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5-scores.html \ T0132.t2k-w0.5-scores.html >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/end_section_summary_html \ >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_section_head_summary_html \ "Template model scores" >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/strip_comments < T0132.template-lib.dist-rdb \ | /projects/compbio/experiments/protein-predict/SAM_T02/scripts/shorten_mod_names \ | /projects/compbio/bin/row SEQID eq T0132 \ | /projects/compbio/bin/sorttbl EVALUE \ > T0132.template-lib-sorted.rdb /projects/compbio/experiments/protein-predict/SAM_T02/scripts/annotate_template_scores < T0132.template-lib-sorted.rdb > T0132.template-lib-scores.rdb /projects/compbio/experiments/protein-predict/SAM_T02/scripts/oneway_hits_rdb2html T0132.template-lib-scores < T0132.template-lib-scores.rdb > T0132.template-lib-scores.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Annotated template model scores" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.template-lib-scores.html \ T0132.template-lib-scores.html >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/end_section_summary_html \ >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_section_head_summary_html \ "Top Hits" >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/casp5/scripts-human/best_scores -num 3 -E 0.01 T0132.t2k-w0.5-scores.rdb T0132.template-lib-scores.rdb T0132.t2k-100-30-dssp-ebghstl-scores.rdb T0132.t2k-100-30-stride-ebghtl-scores.rdb T0132.t2k-100-30-str-scores.rdb T0132.t2k-100-30-alpha-scores.rdb T0132.t2k-100-30-dssp_ehl2-scores.rdb > T0132.t2k.best-scores.rdb /projects/compbio/experiments/casp5/scripts-human/oneway_hits_rdb2html T0132.t2k.best_hits < T0132.t2k.best-scores.rdb > T0132.t2k.best-scores.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Best scoring hits from all models" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.best-scores.html \ T0132.t2k.best-scores.html >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/end_section_summary_html \ >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_section_head_summary_html \ "Alignments for Top Hits" >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/casp5/scripts-human/get_t2k_lib_hits < T0132.t2k.best-scores.rdb > T0132.t2k.top_hits_t2k /projects/compbio/experiments/casp5/scripts-human/get_t2k_lib_hits -negate < T0132.t2k.best-scores.rdb > T0132.t2k.top_hits_non_t2k echo "Building pairwise alignments" Building pairwise alignments /projects/compbio/experiments/casp5/scripts-human/t2k_lib_pairwise_alignments /projects/compbio/experiments/casp5/t0132/selected \ T0132 T0132.t2k.dssp-ebghstl.mod T0132.t2k.stride-ebghtl.mod T0132.t2k.str.mod T0132.t2k-w0.5.mlib T0132.t2k-100-30-dssp-ebghstl.mlib T0132.t2k-100-30-stride-ebghtl.mlib T0132.t2k-100-30-str.mlib 6014 \ < T0132.t2k.top_hits_t2k @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-EBGHTL-local-adpstyle1.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-stride-ebghtl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-stride-ebghtl (T0132.t2k-100-30-stride-ebghtl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -96.188683 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-EBGHTL-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-EBGHTL-local-adpstyle1.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-stride-ebghtl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-stride-ebghtl (T0132.t2k-100-30-stride-ebghtl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -96.188683 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-EBGHTL-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-EBGHTL-global-adpstyle1.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1krs/T0132-1krs-2track-protein-EBGHTL-global-adpstyle1.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -86.501892 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-EBGHTL-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-EBGHTL-global-adpstyle1.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1krs/T0132-1krs-2track-protein-EBGHTL-global-adpstyle1.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -86.240387 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-EBGHTL-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-EBGHSTL-local-adpstyle1.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-dssp-ebghstl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-dssp-ebghstl (T0132.t2k-100-30-dssp-ebghstl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -95.229431 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-EBGHSTL-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-EBGHSTL-local-adpstyle1.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-dssp-ebghstl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-dssp-ebghstl (T0132.t2k-100-30-dssp-ebghstl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -95.229431 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-EBGHSTL-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-EBGHSTL-global-adpstyle1.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1krs/T0132-1krs-2track-protein-EBGHSTL-global-adpstyle1.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -85.243652 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-EBGHSTL-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-EBGHSTL-global-adpstyle1.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1krs/T0132-1krs-2track-protein-EBGHSTL-global-adpstyle1.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -85.179153 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-EBGHSTL-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-STR-local-adpstyle1.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 2 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-str.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-str (T0132.t2k-100-30-str model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -100.228378 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-STR-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-STR-local-adpstyle1.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 2 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-str.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-str (T0132.t2k-100-30-str model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -100.227882 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-STR-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-STR-global-adpstyle1.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 0 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1krs/T0132-1krs-2track-protein-STR-global-adpstyle1.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -89.879089 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-STR-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-STR-global-adpstyle1.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 0 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1krs/T0132-1krs-2track-protein-STR-global-adpstyle1.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -89.957092 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-STR-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-vit-adpstyle1.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 1 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -96.402390 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/T0132-1krs-vit-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-vit-adpstyle1.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 1 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -96.402390 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/T0132-1krs-vit-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/1krs-T0132-vit-adpstyle1.pw -i /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 1 Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-9412/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.787929 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/1krs-T0132-vit-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/1krs-T0132-vit-adpstyle1.pw -i /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 1 Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-9412/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.787929 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/1krs-T0132-vit-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-local-adpstyle1.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq -dbsize 6014 -adpstyle 1 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Reading parameter file T0132.t2k-w0.5.mod T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m Scoring model T0132.t2k-w0.5.mod (T0132.t2k-w0.5 model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -98.856400 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/T0132-1krs-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-local-adpstyle1.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq -dbsize 6014 -adpstyle 1 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Reading parameter file T0132.t2k-w0.5.mod T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m Scoring model T0132.t2k-w0.5.mod (T0132.t2k-w0.5 model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -98.856377 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/T0132-1krs-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/1krs-T0132-local-adpstyle1.pw -i /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5-db.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq -dbsize 6014 -adpstyle 1 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-9412/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod(21): Replacing nostruct-align/1krs.t2k-w0.5-db model number 1 with MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-9412/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod (nostruct-align/1krs.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.907554 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/1krs-T0132-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/1krs-T0132-local-adpstyle1.pw -i /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5-db.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq -dbsize 6014 -adpstyle 1 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-9412/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod(21): Replacing nostruct-align/1krs.t2k-w0.5-db model number 1 with MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-9412/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod (nostruct-align/1krs.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.907514 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/1krs-T0132-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-simpleSW-adpstyle1.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq -dbsize 6014 -adpstyle 1 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.mod(22): Reading MODEL -- Model from alignment file T0132.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -133.861877 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/T0132-1krs-simpleSW-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-simpleSW-adpstyle1.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq -dbsize 6014 -adpstyle 1 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.mod(22): Reading MODEL -- Model from alignment file T0132.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -133.858429 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/T0132-1krs-simpleSW-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/1krs-T0132-fssp-global-adpstyle1.pw -i /projects/compbio/experiments/models.97/pdb/1k/1krs/struct-align/1krs.fssp-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq -dbsize 6014 -adpstyle 1 -sw 0 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1krs/struct-align/1krs.fssp-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1krs/struct-align/1krs.fssp-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-15054/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1k/1krs/struct-align/1krs.fssp-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: 9.172317 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/1krs-T0132-fssp-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/1krs-T0132-fssp-global-adpstyle1.pw -i /projects/compbio/experiments/models.97/pdb/1k/1krs/struct-align/1krs.fssp-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq -dbsize 6014 -adpstyle 1 -sw 0 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1krs/struct-align/1krs.fssp-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1krs/struct-align/1krs.fssp-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-15054/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1k/1krs/struct-align/1krs.fssp-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: 9.171827 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/1krs-T0132-fssp-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-EBGHTL-local-adpstyle5.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-stride-ebghtl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-stride-ebghtl (T0132.t2k-100-30-stride-ebghtl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -96.188683 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-EBGHTL-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-EBGHTL-local-adpstyle5.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-stride-ebghtl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-stride-ebghtl (T0132.t2k-100-30-stride-ebghtl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -96.188683 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-EBGHTL-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-EBGHTL-global-adpstyle5.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1krs/T0132-1krs-2track-protein-EBGHTL-global-adpstyle5.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -86.501892 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-EBGHTL-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-EBGHTL-global-adpstyle5.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1krs/T0132-1krs-2track-protein-EBGHTL-global-adpstyle5.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -86.240387 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-EBGHTL-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-EBGHSTL-local-adpstyle5.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-dssp-ebghstl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-dssp-ebghstl (T0132.t2k-100-30-dssp-ebghstl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -95.229431 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-EBGHSTL-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-EBGHSTL-local-adpstyle5.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-dssp-ebghstl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-dssp-ebghstl (T0132.t2k-100-30-dssp-ebghstl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -95.229431 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-EBGHSTL-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-EBGHSTL-global-adpstyle5.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1krs/T0132-1krs-2track-protein-EBGHSTL-global-adpstyle5.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -85.243652 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-EBGHSTL-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-EBGHSTL-global-adpstyle5.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1krs/T0132-1krs-2track-protein-EBGHSTL-global-adpstyle5.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -85.179153 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-EBGHSTL-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-STR-local-adpstyle5.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 2 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-str.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-str (T0132.t2k-100-30-str model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -100.228378 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-STR-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-STR-local-adpstyle5.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 2 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-str.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-str (T0132.t2k-100-30-str model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -100.227882 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-STR-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-STR-global-adpstyle5.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 0 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1krs/T0132-1krs-2track-protein-STR-global-adpstyle5.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -89.879089 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-STR-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-2track-protein-STR-global-adpstyle5.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 0 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1krs/T0132-1krs-2track-protein-STR-global-adpstyle5.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -89.957092 Database has 2 sequences with 274 residues. @@@@ gzip -f 1krs/T0132-1krs-2track-protein-STR-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-vit-adpstyle5.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 5 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -96.402390 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/T0132-1krs-vit-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-vit-adpstyle5.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 5 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -96.402390 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/T0132-1krs-vit-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/1krs-T0132-vit-adpstyle5.pw -i /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 5 Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-9412/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.787929 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/1krs-T0132-vit-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/1krs-T0132-vit-adpstyle5.pw -i /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 5 Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-9412/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.787929 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/1krs-T0132-vit-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-local-adpstyle5.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq -dbsize 6014 -adpstyle 5 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Reading parameter file T0132.t2k-w0.5.mod T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m Scoring model T0132.t2k-w0.5.mod (T0132.t2k-w0.5 model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -98.856400 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/T0132-1krs-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-local-adpstyle5.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq -dbsize 6014 -adpstyle 5 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Reading parameter file T0132.t2k-w0.5.mod T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m Scoring model T0132.t2k-w0.5.mod (T0132.t2k-w0.5 model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -98.856377 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/T0132-1krs-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/1krs-T0132-local-adpstyle5.pw -i /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5-db.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq -dbsize 6014 -adpstyle 5 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-9412/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod(21): Replacing nostruct-align/1krs.t2k-w0.5-db model number 1 with MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-9412/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod (nostruct-align/1krs.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.907554 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/1krs-T0132-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/1krs-T0132-local-adpstyle5.pw -i /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5-db.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq -dbsize 6014 -adpstyle 5 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-9412/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod(21): Replacing nostruct-align/1krs.t2k-w0.5-db model number 1 with MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc85-9412/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t2k-w0.5.mod (nostruct-align/1krs.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.907514 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/1krs-T0132-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-simpleSW-adpstyle5.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq -dbsize 6014 -adpstyle 5 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.mod(22): Reading MODEL -- Model from alignment file T0132.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -133.861877 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/T0132-1krs-simpleSW-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/T0132-1krs-simpleSW-adpstyle5.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq -dbsize 6014 -adpstyle 5 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.mod(22): Reading MODEL -- Model from alignment file T0132.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -133.858429 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/T0132-1krs-simpleSW-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/1krs-T0132-fssp-global-adpstyle5.pw -i /projects/compbio/experiments/models.97/pdb/1k/1krs/struct-align/1krs.fssp-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.seq -dbsize 6014 -adpstyle 5 -sw 0 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1krs/struct-align/1krs.fssp-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1krs/struct-align/1krs.fssp-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-15054/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1k/1krs/struct-align/1krs.fssp-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: 9.172317 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/1krs-T0132-fssp-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1krs/1krs-T0132-fssp-global-adpstyle5.pw -i /projects/compbio/experiments/models.97/pdb/1k/1krs/struct-align/1krs.fssp-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1k/1krs/info/1krs.stride-mixed.x.seq -dbsize 6014 -adpstyle 5 -sw 0 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1krs/struct-align/1krs.fssp-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1krs/struct-align/1krs.fssp-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-15054/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1k/1krs/struct-align/1krs.fssp-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: 9.171827 Database has 51 sequences with 6757 residues. @@@@ gzip -f 1krs/1krs-T0132-fssp-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-EBGHTL-local-adpstyle1.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-stride-ebghtl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-stride-ebghtl (T0132.t2k-100-30-stride-ebghtl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -102.761177 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-EBGHTL-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-EBGHTL-local-adpstyle1.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-stride-ebghtl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-stride-ebghtl (T0132.t2k-100-30-stride-ebghtl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -102.761177 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-EBGHTL-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-EBGHTL-global-adpstyle1.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1c8uA/T0132-1c8uA-2track-protein-EBGHTL-global-adpstyle1.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -86.020386 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-EBGHTL-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-EBGHTL-global-adpstyle1.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1c8uA/T0132-1c8uA-2track-protein-EBGHTL-global-adpstyle1.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -86.020386 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-EBGHTL-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-EBGHSTL-local-adpstyle1.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-dssp-ebghstl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-dssp-ebghstl (T0132.t2k-100-30-dssp-ebghstl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -103.960930 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-EBGHSTL-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-EBGHSTL-local-adpstyle1.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-dssp-ebghstl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-dssp-ebghstl (T0132.t2k-100-30-dssp-ebghstl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -103.960930 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-EBGHSTL-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-EBGHSTL-global-adpstyle1.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1c8uA/T0132-1c8uA-2track-protein-EBGHSTL-global-adpstyle1.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -87.416664 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-EBGHSTL-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-EBGHSTL-global-adpstyle1.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1c8uA/T0132-1c8uA-2track-protein-EBGHSTL-global-adpstyle1.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -87.416664 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-EBGHSTL-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-STR-local-adpstyle1.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 2 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-str.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-str (T0132.t2k-100-30-str model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -114.418800 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-STR-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-STR-local-adpstyle1.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 2 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-str.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-str (T0132.t2k-100-30-str model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -114.418800 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-STR-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-STR-global-adpstyle1.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 0 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1c8uA/T0132-1c8uA-2track-protein-STR-global-adpstyle1.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -98.138512 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-STR-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-STR-global-adpstyle1.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 0 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1c8uA/T0132-1c8uA-2track-protein-STR-global-adpstyle1.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -98.138512 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-STR-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-vit-adpstyle1.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 1 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -96.393745 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-vit-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-vit-adpstyle1.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 1 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -96.393745 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-vit-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/1c8uA-T0132-vit-adpstyle1.pw -i /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 1 Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-11082/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.947415 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/1c8uA-T0132-vit-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/1c8uA-T0132-vit-adpstyle1.pw -i /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 1 Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-11082/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.947415 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/1c8uA-T0132-vit-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-local-adpstyle1.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq -dbsize 6014 -adpstyle 1 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Reading parameter file T0132.t2k-w0.5.mod T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m Scoring model T0132.t2k-w0.5.mod (T0132.t2k-w0.5 model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -98.899597 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-local-adpstyle1.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq -dbsize 6014 -adpstyle 1 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Reading parameter file T0132.t2k-w0.5.mod T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m Scoring model T0132.t2k-w0.5.mod (T0132.t2k-w0.5 model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -98.899597 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/1c8uA-T0132-local-adpstyle1.pw -i /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5-db.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq -dbsize 6014 -adpstyle 1 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-11082/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod(22): Replacing nostruct-align/1c8uA.t2k-w0.5-db model number 1 with MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-11082/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod (nostruct-align/1c8uA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.934298 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/1c8uA-T0132-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/1c8uA-T0132-local-adpstyle1.pw -i /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5-db.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq -dbsize 6014 -adpstyle 1 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-11082/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod(22): Replacing nostruct-align/1c8uA.t2k-w0.5-db model number 1 with MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-11082/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod (nostruct-align/1c8uA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.934298 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/1c8uA-T0132-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-simpleSW-adpstyle1.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq -dbsize 6014 -adpstyle 1 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.mod(22): Reading MODEL -- Model from alignment file T0132.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -133.871124 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-simpleSW-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-simpleSW-adpstyle1.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq -dbsize 6014 -adpstyle 1 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.mod(22): Reading MODEL -- Model from alignment file T0132.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -133.871124 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-simpleSW-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/1c8uA-T0132-fssp-global-adpstyle1.pw -i /projects/compbio/experiments/models.97/pdb/1c/1c8uA/struct-align/1c8uA.fssp-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq -dbsize 6014 -adpstyle 1 -sw 0 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c8uA/struct-align/1c8uA.fssp-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c8uA/struct-align/1c8uA.fssp-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-23852/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c8uA/struct-align/1c8uA.fssp-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -3.095723 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/1c8uA-T0132-fssp-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/1c8uA-T0132-fssp-global-adpstyle1.pw -i /projects/compbio/experiments/models.97/pdb/1c/1c8uA/struct-align/1c8uA.fssp-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq -dbsize 6014 -adpstyle 1 -sw 0 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c8uA/struct-align/1c8uA.fssp-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c8uA/struct-align/1c8uA.fssp-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-23852/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c8uA/struct-align/1c8uA.fssp-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -3.095723 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/1c8uA-T0132-fssp-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-EBGHTL-local-adpstyle5.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-stride-ebghtl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-stride-ebghtl (T0132.t2k-100-30-stride-ebghtl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -102.761177 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-EBGHTL-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-EBGHTL-local-adpstyle5.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-stride-ebghtl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-stride-ebghtl (T0132.t2k-100-30-stride-ebghtl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -102.761177 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-EBGHTL-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-EBGHTL-global-adpstyle5.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1c8uA/T0132-1c8uA-2track-protein-EBGHTL-global-adpstyle5.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -86.020386 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-EBGHTL-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-EBGHTL-global-adpstyle5.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1c8uA/T0132-1c8uA-2track-protein-EBGHTL-global-adpstyle5.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -86.020386 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-EBGHTL-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-EBGHSTL-local-adpstyle5.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-dssp-ebghstl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-dssp-ebghstl (T0132.t2k-100-30-dssp-ebghstl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -103.960930 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-EBGHSTL-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-EBGHSTL-local-adpstyle5.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-dssp-ebghstl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-dssp-ebghstl (T0132.t2k-100-30-dssp-ebghstl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -103.960930 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-EBGHSTL-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-EBGHSTL-global-adpstyle5.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1c8uA/T0132-1c8uA-2track-protein-EBGHSTL-global-adpstyle5.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -87.416664 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-EBGHSTL-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-EBGHSTL-global-adpstyle5.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1c8uA/T0132-1c8uA-2track-protein-EBGHSTL-global-adpstyle5.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -87.416664 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-EBGHSTL-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-STR-local-adpstyle5.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 2 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-str.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-str (T0132.t2k-100-30-str model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -114.418800 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-STR-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-STR-local-adpstyle5.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 2 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-str.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-str (T0132.t2k-100-30-str model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -114.418800 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-STR-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-STR-global-adpstyle5.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 0 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1c8uA/T0132-1c8uA-2track-protein-STR-global-adpstyle5.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -98.138512 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-STR-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-2track-protein-STR-global-adpstyle5.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 0 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1c8uA/T0132-1c8uA-2track-protein-STR-global-adpstyle5.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -98.138512 Database has 2 sequences with 439 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-2track-protein-STR-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-vit-adpstyle5.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 5 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -96.393745 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-vit-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-vit-adpstyle5.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 5 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -96.393745 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-vit-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/1c8uA-T0132-vit-adpstyle5.pw -i /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 5 Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-11082/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.947415 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/1c8uA-T0132-vit-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/1c8uA-T0132-vit-adpstyle5.pw -i /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 5 Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-11082/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.947415 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/1c8uA-T0132-vit-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-local-adpstyle5.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq -dbsize 6014 -adpstyle 5 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Reading parameter file T0132.t2k-w0.5.mod T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m Scoring model T0132.t2k-w0.5.mod (T0132.t2k-w0.5 model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -98.899597 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-local-adpstyle5.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq -dbsize 6014 -adpstyle 5 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Reading parameter file T0132.t2k-w0.5.mod T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m Scoring model T0132.t2k-w0.5.mod (T0132.t2k-w0.5 model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -98.899597 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/1c8uA-T0132-local-adpstyle5.pw -i /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5-db.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq -dbsize 6014 -adpstyle 5 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-11082/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod(22): Replacing nostruct-align/1c8uA.t2k-w0.5-db model number 1 with MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-11082/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod (nostruct-align/1c8uA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.934298 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/1c8uA-T0132-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/1c8uA-T0132-local-adpstyle5.pw -i /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5-db.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq -dbsize 6014 -adpstyle 5 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-11082/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod(22): Replacing nostruct-align/1c8uA.t2k-w0.5-db model number 1 with MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc19-11082/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c8uA/nostruct-align/1c8uA.t2k-w0.5.mod (nostruct-align/1c8uA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.934298 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/1c8uA-T0132-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-simpleSW-adpstyle5.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq -dbsize 6014 -adpstyle 5 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.mod(22): Reading MODEL -- Model from alignment file T0132.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -133.871124 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-simpleSW-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/T0132-1c8uA-simpleSW-adpstyle5.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq -dbsize 6014 -adpstyle 5 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.mod(22): Reading MODEL -- Model from alignment file T0132.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -133.871124 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/T0132-1c8uA-simpleSW-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/1c8uA-T0132-fssp-global-adpstyle5.pw -i /projects/compbio/experiments/models.97/pdb/1c/1c8uA/struct-align/1c8uA.fssp-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.seq -dbsize 6014 -adpstyle 5 -sw 0 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c8uA/struct-align/1c8uA.fssp-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c8uA/struct-align/1c8uA.fssp-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-23852/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c8uA/struct-align/1c8uA.fssp-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -3.095723 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/1c8uA-T0132-fssp-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1c8uA/1c8uA-T0132-fssp-global-adpstyle5.pw -i /projects/compbio/experiments/models.97/pdb/1c/1c8uA/struct-align/1c8uA.fssp-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1c/1c8uA/info/1c8uA.stride-mixed.x.seq -dbsize 6014 -adpstyle 5 -sw 0 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c8uA/struct-align/1c8uA.fssp-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c8uA/struct-align/1c8uA.fssp-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-23852/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1c/1c8uA/struct-align/1c8uA.fssp-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -3.095723 Database has 51 sequences with 6922 residues. @@@@ gzip -f 1c8uA/1c8uA-T0132-fssp-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1lo7A/T0132-1lo7A-2track-protein-EBGHTL-local-adpstyle1.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-stride-ebghtl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-stride-ebghtl (T0132.t2k-100-30-stride-ebghtl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -106.513786 Database has 2 sequences with 295 residues. @@@@ gzip -f 1lo7A/T0132-1lo7A-2track-protein-EBGHTL-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1lo7A/T0132-1lo7A-2track-protein-EBGHTL-global-adpstyle1.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1lo7A/T0132-1lo7A-2track-protein-EBGHTL-global-adpstyle1.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -104.791649 Database has 2 sequences with 295 residues. @@@@ gzip -f 1lo7A/T0132-1lo7A-2track-protein-EBGHTL-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1lo7A/T0132-1lo7A-2track-protein-EBGHSTL-local-adpstyle1.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-dssp-ebghstl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-dssp-ebghstl (T0132.t2k-100-30-dssp-ebghstl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -106.958389 Database has 2 sequences with 295 residues. @@@@ gzip -f 1lo7A/T0132-1lo7A-2track-protein-EBGHSTL-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1lo7A/T0132-1lo7A-2track-protein-EBGHSTL-global-adpstyle1.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1lo7A/T0132-1lo7A-2track-protein-EBGHSTL-global-adpstyle1.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -104.985756 Database has 2 sequences with 295 residues. @@@@ gzip -f 1lo7A/T0132-1lo7A-2track-protein-EBGHSTL-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1lo7A/T0132-1lo7A-2track-protein-STR-local-adpstyle1.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 2 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-str.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-str (T0132.t2k-100-30-str model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -119.087402 Database has 2 sequences with 295 residues. @@@@ gzip -f 1lo7A/T0132-1lo7A-2track-protein-STR-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1lo7A/T0132-1lo7A-2track-protein-STR-global-adpstyle1.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 0 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1lo7A/T0132-1lo7A-2track-protein-STR-global-adpstyle1.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -117.307236 Database has 2 sequences with 295 residues. @@@@ gzip -f 1lo7A/T0132-1lo7A-2track-protein-STR-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1lo7A/T0132-1lo7A-vit-adpstyle1.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 1 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -96.350761 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1lo7A/T0132-1lo7A-vit-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1lo7A/1lo7A-T0132-vit-adpstyle1.pw -i /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 1 Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-26943/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.872547 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1lo7A/1lo7A-T0132-vit-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1lo7A/T0132-1lo7A-local-adpstyle1.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.seq -dbsize 6014 -adpstyle 1 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Reading parameter file T0132.t2k-w0.5.mod T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m Scoring model T0132.t2k-w0.5.mod (T0132.t2k-w0.5 model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -98.837021 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1lo7A/T0132-1lo7A-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1lo7A/1lo7A-T0132-local-adpstyle1.pw -i /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t2k-w0.5-db.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.seq -dbsize 6014 -adpstyle 1 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-26943/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t2k-w0.5.mod(22): Replacing nostruct-align/1lo7A.t2k-w0.5-db model number 1 with MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-26943/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t2k-w0.5.mod (nostruct-align/1lo7A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.844587 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1lo7A/1lo7A-T0132-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1lo7A/T0132-1lo7A-simpleSW-adpstyle1.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.seq -dbsize 6014 -adpstyle 1 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.mod(22): Reading MODEL -- Model from alignment file T0132.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -133.847473 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1lo7A/T0132-1lo7A-simpleSW-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1lo7A/T0132-1lo7A-2track-protein-EBGHTL-local-adpstyle5.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-stride-ebghtl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-stride-ebghtl (T0132.t2k-100-30-stride-ebghtl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -106.513786 Database has 2 sequences with 295 residues. @@@@ gzip -f 1lo7A/T0132-1lo7A-2track-protein-EBGHTL-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1lo7A/T0132-1lo7A-2track-protein-EBGHTL-global-adpstyle5.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1lo7A/T0132-1lo7A-2track-protein-EBGHTL-global-adpstyle5.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -104.791649 Database has 2 sequences with 295 residues. @@@@ gzip -f 1lo7A/T0132-1lo7A-2track-protein-EBGHTL-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1lo7A/T0132-1lo7A-2track-protein-EBGHSTL-local-adpstyle5.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-dssp-ebghstl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-dssp-ebghstl (T0132.t2k-100-30-dssp-ebghstl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -106.958389 Database has 2 sequences with 295 residues. @@@@ gzip -f 1lo7A/T0132-1lo7A-2track-protein-EBGHSTL-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1lo7A/T0132-1lo7A-2track-protein-EBGHSTL-global-adpstyle5.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1lo7A/T0132-1lo7A-2track-protein-EBGHSTL-global-adpstyle5.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -104.985756 Database has 2 sequences with 295 residues. @@@@ gzip -f 1lo7A/T0132-1lo7A-2track-protein-EBGHSTL-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1lo7A/T0132-1lo7A-2track-protein-STR-local-adpstyle5.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 2 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-str.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-str (T0132.t2k-100-30-str model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -119.087402 Database has 2 sequences with 295 residues. @@@@ gzip -f 1lo7A/T0132-1lo7A-2track-protein-STR-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1lo7A/T0132-1lo7A-2track-protein-STR-global-adpstyle5.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 0 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1lo7A/T0132-1lo7A-2track-protein-STR-global-adpstyle5.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -117.307236 Database has 2 sequences with 295 residues. @@@@ gzip -f 1lo7A/T0132-1lo7A-2track-protein-STR-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1lo7A/T0132-1lo7A-vit-adpstyle5.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 5 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -96.350761 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1lo7A/T0132-1lo7A-vit-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1lo7A/1lo7A-T0132-vit-adpstyle5.pw -i /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 5 Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-26943/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.872547 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1lo7A/1lo7A-T0132-vit-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1lo7A/T0132-1lo7A-local-adpstyle5.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.seq -dbsize 6014 -adpstyle 5 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Reading parameter file T0132.t2k-w0.5.mod T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m Scoring model T0132.t2k-w0.5.mod (T0132.t2k-w0.5 model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -98.837021 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1lo7A/T0132-1lo7A-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1lo7A/1lo7A-T0132-local-adpstyle5.pw -i /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t2k-w0.5-db.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.seq -dbsize 6014 -adpstyle 5 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-26943/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t2k-w0.5.mod(22): Replacing nostruct-align/1lo7A.t2k-w0.5-db model number 1 with MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc55-26943/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1l/1lo7A/nostruct-align/1lo7A.t2k-w0.5.mod (nostruct-align/1lo7A.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.844587 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1lo7A/1lo7A-T0132-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1lo7A/T0132-1lo7A-simpleSW-adpstyle5.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1l/1lo7A/info/1lo7A.stride-mixed.seq -dbsize 6014 -adpstyle 5 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.mod(22): Reading MODEL -- Model from alignment file T0132.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -133.847473 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1lo7A/T0132-1lo7A-simpleSW-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-EBGHTL-local-adpstyle1.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-stride-ebghtl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-stride-ebghtl (T0132.t2k-100-30-stride-ebghtl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -106.801247 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-EBGHTL-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-EBGHTL-local-adpstyle1.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-stride-ebghtl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-stride-ebghtl (T0132.t2k-100-30-stride-ebghtl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -106.857239 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-EBGHTL-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-EBGHTL-global-adpstyle1.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1bvqA/T0132-1bvqA-2track-protein-EBGHTL-global-adpstyle1.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -105.073097 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-EBGHTL-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-EBGHTL-global-adpstyle1.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1bvqA/T0132-1bvqA-2track-protein-EBGHTL-global-adpstyle1.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -105.679596 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-EBGHTL-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-local-adpstyle1.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-dssp-ebghstl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-dssp-ebghstl (T0132.t2k-100-30-dssp-ebghstl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -106.092049 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-local-adpstyle1.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-dssp-ebghstl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-dssp-ebghstl (T0132.t2k-100-30-dssp-ebghstl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -106.123047 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-global-adpstyle1.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-global-adpstyle1.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -103.961914 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-global-adpstyle1.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-global-adpstyle1.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -104.485901 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-STR-local-adpstyle1.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 2 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-str.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-str (T0132.t2k-100-30-str model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -118.002449 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-STR-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-STR-local-adpstyle1.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 2 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-str.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-str (T0132.t2k-100-30-str model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -118.037445 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-STR-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-STR-global-adpstyle1.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 0 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1bvqA/T0132-1bvqA-2track-protein-STR-global-adpstyle1.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -116.068802 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-STR-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-STR-global-adpstyle1.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 0 -adpstyle 1 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1bvqA/T0132-1bvqA-2track-protein-STR-global-adpstyle1.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -116.592300 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-STR-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-vit-adpstyle1.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 1 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -96.350761 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-vit-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-vit-adpstyle1.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 1 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -96.350761 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-vit-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/1bvqA-T0132-vit-adpstyle1.pw -i /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 1 Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-12679/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.290215 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/1bvqA-T0132-vit-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/1bvqA-T0132-vit-adpstyle1.pw -i /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 1 Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-12679/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.290215 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/1bvqA-T0132-vit-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-local-adpstyle1.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq -dbsize 6014 -adpstyle 1 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Reading parameter file T0132.t2k-w0.5.mod T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m Scoring model T0132.t2k-w0.5.mod (T0132.t2k-w0.5 model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -98.837021 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-local-adpstyle1.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq -dbsize 6014 -adpstyle 1 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Reading parameter file T0132.t2k-w0.5.mod T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m Scoring model T0132.t2k-w0.5.mod (T0132.t2k-w0.5 model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -98.837166 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/1bvqA-T0132-local-adpstyle1.pw -i /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5-db.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq -dbsize 6014 -adpstyle 1 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-12679/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod(22): Replacing nostruct-align/1bvqA.t2k-w0.5-db model number 1 with MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-12679/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod (nostruct-align/1bvqA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.103825 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/1bvqA-T0132-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/1bvqA-T0132-local-adpstyle1.pw -i /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5-db.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq -dbsize 6014 -adpstyle 1 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-12679/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod(22): Replacing nostruct-align/1bvqA.t2k-w0.5-db model number 1 with MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-12679/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod (nostruct-align/1bvqA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.103785 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/1bvqA-T0132-local-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-simpleSW-adpstyle1.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq -dbsize 6014 -adpstyle 1 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.mod(22): Reading MODEL -- Model from alignment file T0132.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -133.847473 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-simpleSW-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-simpleSW-adpstyle1.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq -dbsize 6014 -adpstyle 1 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.mod(22): Reading MODEL -- Model from alignment file T0132.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -133.847565 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-simpleSW-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/1bvqA-T0132-fssp-global-adpstyle1.pw -i /projects/compbio/experiments/models.97/pdb/1b/1bvqA/struct-align/1bvqA.fssp-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq -dbsize 6014 -adpstyle 1 -sw 0 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvqA/struct-align/1bvqA.fssp-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvqA/struct-align/1bvqA.fssp-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-22484/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bvqA/struct-align/1bvqA.fssp-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -3.231294 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/1bvqA-T0132-fssp-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/1bvqA-T0132-fssp-global-adpstyle1.pw -i /projects/compbio/experiments/models.97/pdb/1b/1bvqA/struct-align/1bvqA.fssp-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq -dbsize 6014 -adpstyle 1 -sw 0 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvqA/struct-align/1bvqA.fssp-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvqA/struct-align/1bvqA.fssp-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-22484/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bvqA/struct-align/1bvqA.fssp-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -3.234922 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/1bvqA-T0132-fssp-global-adpstyle1.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-EBGHTL-local-adpstyle5.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-stride-ebghtl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-stride-ebghtl (T0132.t2k-100-30-stride-ebghtl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -106.801247 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-EBGHTL-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-EBGHTL-local-adpstyle5.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-stride-ebghtl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-stride-ebghtl (T0132.t2k-100-30-stride-ebghtl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -106.857239 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-EBGHTL-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-EBGHTL-global-adpstyle5.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1bvqA/T0132-1bvqA-2track-protein-EBGHTL-global-adpstyle5.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -105.073097 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-EBGHTL-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-EBGHTL-global-adpstyle5.pw -alphabet protein,EBGHTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.2d -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1bvqA/T0132-1bvqA-2track-protein-EBGHTL-global-adpstyle5.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-ebghtl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.stride-ebghtl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -105.679596 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-EBGHTL-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-local-adpstyle5.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-dssp-ebghstl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-dssp-ebghstl (T0132.t2k-100-30-dssp-ebghstl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -106.092049 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-local-adpstyle5.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 2 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-dssp-ebghstl.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-dssp-ebghstl (T0132.t2k-100-30-dssp-ebghstl model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -106.123047 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-global-adpstyle5.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-global-adpstyle5.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -103.961914 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-global-adpstyle5.pw -alphabet protein,EBGHSTL -trackcoeff 1.0,0.3 -sw 0 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.dssp -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-global-adpstyle5.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-ebghstl.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.dssp-ebghstl.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -104.485901 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-STR-local-adpstyle5.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 2 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-str.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-str (T0132.t2k-100-30-str model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -118.002449 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-STR-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-STR-local-adpstyle5.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 2 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-100-30-str.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model T0132.t2k-100-30-str (T0132.t2k-100-30-str model number 1) T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -118.037445 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-STR-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-STR-global-adpstyle5.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 0 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1bvqA/T0132-1bvqA-2track-protein-STR-global-adpstyle5.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -116.068802 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-STR-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-2track-protein-STR-global-adpstyle5.pw -alphabet protein,STR -trackcoeff 1.0,0.3 -sw 0 -adpstyle 5 -trackmod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m,/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.seq -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq,/projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.str -dbsize 6014 -subtract_null 4 -select_align 8 SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model 1bvqA/T0132-1bvqA-2track-protein-STR-global-adpstyle5.pw /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(1909): Reading track 0 model from MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str.mod(953): Reading track 1 model from MODEL -- Model from 2nd structure file T0132.t2k.str.rdb WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) Warning: sequence file /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m longer than other tracks . Average NLL-Simple NULL score: -116.592300 Database has 2 sequences with 295 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-2track-protein-STR-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-vit-adpstyle5.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 5 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -96.350761 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-vit-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-vit-adpstyle5.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 5 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -96.350761 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-vit-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/1bvqA-T0132-vit-adpstyle5.pw -i /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 5 Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-12679/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.290215 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/1bvqA-T0132-vit-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/1bvqA-T0132-vit-adpstyle5.pw -i /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq -dbsize 6014 -viterbi 1 -sw 2 -subtract_null 4 -select_align 8 -adpstyle 5 Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-12679/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.290215 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/1bvqA-T0132-vit-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-local-adpstyle5.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq -dbsize 6014 -adpstyle 5 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Reading parameter file T0132.t2k-w0.5.mod T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m Scoring model T0132.t2k-w0.5.mod (T0132.t2k-w0.5 model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -98.837021 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-local-adpstyle5.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq -dbsize 6014 -adpstyle 5 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Reading parameter file T0132.t2k-w0.5.mod T0132.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-16765/tmp.a2m Scoring model T0132.t2k-w0.5.mod (T0132.t2k-w0.5 model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -98.837166 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/1bvqA-T0132-local-adpstyle5.pw -i /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5-db.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq -dbsize 6014 -adpstyle 5 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-12679/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod(22): Replacing nostruct-align/1bvqA.t2k-w0.5-db model number 1 with MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-12679/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod (nostruct-align/1bvqA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.103825 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/1bvqA-T0132-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/1bvqA-T0132-local-adpstyle5.pw -i /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod -modellibrary /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5-db.mlib -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq -dbsize 6014 -adpstyle 5 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod(22): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-12679/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod(22): Replacing nostruct-align/1bvqA.t2k-w0.5-db model number 1 with MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-cc60-12679/tmp.a2m Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t2k-w0.5.mod (nostruct-align/1bvqA.t2k-w0.5-db model number 1) Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.103785 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/1bvqA-T0132-local-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-simpleSW-adpstyle5.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq -dbsize 6014 -adpstyle 5 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.mod(22): Reading MODEL -- Model from alignment file T0132.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -133.847473 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-simpleSW-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/T0132-1bvqA-simpleSW-adpstyle5.pw -i /projects/compbio/experiments/casp5/t0132/selected/T0132.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq -dbsize 6014 -adpstyle 5 -sw 2 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/casp5/t0132/selected/T0132.mod /projects/compbio/experiments/casp5/t0132/selected/T0132.mod(22): Reading MODEL -- Model from alignment file T0132.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/casp5/t0132/selected/T0132.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -133.847565 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/T0132-1bvqA-simpleSW-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/1bvqA-T0132-fssp-global-adpstyle5.pw -i /projects/compbio/experiments/models.97/pdb/1b/1bvqA/struct-align/1bvqA.fssp-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.seq -dbsize 6014 -adpstyle 5 -sw 0 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvqA/struct-align/1bvqA.fssp-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvqA/struct-align/1bvqA.fssp-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-22484/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bvqA/struct-align/1bvqA.fssp-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -3.231294 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/1bvqA-T0132-fssp-global-adpstyle5.pw.a2m @@@@ /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore 1bvqA/1bvqA-T0132-fssp-global-adpstyle5.pw -i /projects/compbio/experiments/models.97/pdb/1b/1bvqA/struct-align/1bvqA.fssp-w0.5.mod -db /projects/compbio/experiments/casp5/t0132/selected/T0132.a2m -db /projects/compbio/experiments/models.97/pdb/1b/1bvqA/info/1bvqA.stride-mixed.x.seq -dbsize 6014 -adpstyle 5 -sw 0 -subtract_null 4 -select_align 8 Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvqA/struct-align/1bvqA.fssp-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvqA/struct-align/1bvqA.fssp-w0.5.mod(22): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-bark-22484/tmp.a2m SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 06/11/02_10:53:47 Scoring model /projects/compbio/experiments/models.97/pdb/1b/1bvqA/struct-align/1bvqA.fssp-w0.5.mod WARNING: Reverse null model and E-value calculations are being made without model calibration. Use -calibrate first for better results. Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -3.234922 Database has 51 sequences with 6778 residues. @@@@ gzip -f 1bvqA/1bvqA-T0132-fssp-global-adpstyle5.pw.a2m /projects/compbio/experiments/casp5/scripts-human/t2k_non_lib_pairwise_alignments /projects/compbio/experiments/casp5/t0132/selected \ T0132 T0132.t2k-w0.5.mlib 6014 < T0132.t2k.top_hits_non_t2k echo "Template FSSP_rep" > T0132.t2k.top_hits_pwise_alignments.rdb echo "5S 5S" >> T0132.t2k.top_hits_pwise_alignments.rdb cat T0132.t2k.top_hits_t2k T0132.t2k.top_hits_non_t2k >> T0132.t2k.top_hits_pwise_alignments.rdb /projects/compbio/experiments/casp5/scripts-human/gather_best_align_scores 50 /projects/compbio/experiments/casp5/t0132/selected T0132 T0132.t2k.top_hits_pwise_alignments.rdb T0132.t2k.best-scores.rdb > T0132.t2k.predicted_alignments.rdb /projects/compbio/experiments/casp5/scripts-human/top_reported_alignments 5 T0132.t2k.predicted_alignments.rdb T0132.t2k.best-scores.rdb > T0132.t2k.top_reported_alignments.rdb Looking for 5 hits in T0132.t2k.best-scores.rdb, choosing alignments from T0132.t2k.predicted_alignments.rdb read 4 hits adding 1lo7AUse of uninitialized value in pattern match (m//) at /projects/compbio/experiments/casp5/scripts-human/top_reported_alignments line 78, line 7. Use of uninitialized value in pattern match (m//) at /projects/compbio/experiments/casp5/scripts-human/top_reported_alignments line 81, line 7. adding 1bvqAadding 1c8uAadding 1krsUse of uninitialized value in hash element at /projects/compbio/experiments/casp5/scripts-human/top_reported_alignments line 70, line 21. Use of uninitialized value in hash element at /projects/compbio/experiments/casp5/scripts-human/top_reported_alignments line 70, line 21. Use of uninitialized value in hash element at /projects/compbio/experiments/casp5/scripts-human/top_reported_alignments line 70, line 22. Use of uninitialized value in hash element at /projects/compbio/experiments/casp5/scripts-human/top_reported_alignments line 70, line 22. Use of uninitialized value in hash element at /projects/compbio/experiments/casp5/scripts-human/top_reported_alignments line 70, line 25. Use of uninitialized value in hash element at /projects/compbio/experiments/casp5/scripts-human/top_reported_alignments line 70, line 25. Use of uninitialized value in hash element at /projects/compbio/experiments/casp5/scripts-human/top_reported_alignments line 70, line 26. Use of uninitialized value in hash element at /projects/compbio/experiments/casp5/scripts-human/top_reported_alignments line 70, line 26. Use of uninitialized value in hash element at /projects/compbio/experiments/casp5/scripts-human/top_reported_alignments line 70, line 31. Use of uninitialized value in hash element at /projects/compbio/experiments/casp5/scripts-human/top_reported_alignments line 70, line 31. Use of uninitialized value in hash element at /projects/compbio/experiments/casp5/scripts-human/top_reported_alignments line 70, line 32. Use of uninitialized value in hash element at /projects/compbio/experiments/casp5/scripts-human/top_reported_alignments line 70, line 32. Use of uninitialized value in hash element at /projects/compbio/experiments/casp5/scripts-human/top_reported_alignments line 70, line 33. Use of uninitialized value in hash element at /projects/compbio/experiments/casp5/scripts-human/top_reported_alignments line 70, line 33. Use of uninitialized value in hash element at /projects/compbio/experiments/casp5/scripts-human/top_reported_alignments line 70, line 34. Use of uninitialized value in hash element at /projects/compbio/experiments/casp5/scripts-human/top_reported_alignments line 70, line 34. Use of uninitialized value in hash element at /projects/compbio/experiments/casp5/scripts-human/top_reported_alignments line 70, line 47. Use of uninitialized value in hash element at /projects/compbio/experiments/casp5/scripts-human/top_reported_alignments line 70, line 47. Use of uninitialized value in hash element at /projects/compbio/experiments/casp5/scripts-human/top_reported_alignments line 70, line 48. Use of uninitialized value in hash element at /projects/compbio/experiments/casp5/scripts-human/top_reported_alignments line 70, line 48. There are 0..3 keys in rowsToPrint /projects/compbio/experiments/protein-predict/SAM_T02/scripts/format_casp_alignments 50 /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert /projects/compbio/experiments/casp5/t0132/selected T0132 0 < T0132.t2k.predicted_alignments.rdb > T0132.t2k.many_alignments.rdb Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Warning: template sequence in file /projects/compbio/experiments/casp5/t0132/selected/1bvqA/T0132-1bvqA-2track-protein-STR-global-adpstyle5.pw.a2m.gz does not match template SEQRES record for pdb id 1bvqA Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Warning: template sequence in file /projects/compbio/experiments/casp5/t0132/selected/1bvqA/T0132-1bvqA-2track-protein-STR-global-adpstyle1.pw.a2m.gz does not match template SEQRES record for pdb id 1bvqA Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Warning: template sequence in file /projects/compbio/experiments/casp5/t0132/selected/1bvqA/T0132-1bvqA-2track-protein-STR-local-adpstyle1.pw.a2m.gz does not match template SEQRES record for pdb id 1bvqA Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Warning: template sequence in file /projects/compbio/experiments/casp5/t0132/selected/1bvqA/T0132-1bvqA-2track-protein-STR-local-adpstyle5.pw.a2m.gz does not match template SEQRES record for pdb id 1bvqA Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Warning: template sequence in file /projects/compbio/experiments/casp5/t0132/selected/1krs/T0132-1krs-2track-protein-STR-local-adpstyle1.pw.a2m.gz does not match template SEQRES record for pdb id 1krs Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Warning: template sequence in file /projects/compbio/experiments/casp5/t0132/selected/1krs/T0132-1krs-2track-protein-STR-local-adpstyle5.pw.a2m.gz does not match template SEQRES record for pdb id 1krs Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Warning: template sequence in file /projects/compbio/experiments/casp5/t0132/selected/1krs/T0132-1krs-2track-protein-STR-global-adpstyle5.pw.a2m.gz does not match template SEQRES record for pdb id 1krs Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Warning: template sequence in file /projects/compbio/experiments/casp5/t0132/selected/1krs/T0132-1krs-2track-protein-STR-global-adpstyle1.pw.a2m.gz does not match template SEQRES record for pdb id 1krs Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Warning: template sequence in file /projects/compbio/experiments/casp5/t0132/selected/1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-global-adpstyle5.pw.a2m.gz does not match template SEQRES record for pdb id 1bvqA Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Warning: template sequence in file /projects/compbio/experiments/casp5/t0132/selected/1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-global-adpstyle1.pw.a2m.gz does not match template SEQRES record for pdb id 1bvqA Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Warning: template sequence in file /projects/compbio/experiments/casp5/t0132/selected/1bvqA/T0132-1bvqA-2track-protein-EBGHTL-global-adpstyle5.pw.a2m.gz does not match template SEQRES record for pdb id 1bvqA Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Warning: template sequence in file /projects/compbio/experiments/casp5/t0132/selected/1bvqA/T0132-1bvqA-2track-protein-EBGHTL-global-adpstyle1.pw.a2m.gz does not match template SEQRES record for pdb id 1bvqA Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Error: template not found in alignment. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Error: template not found in alignment. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Warning: template sequence in file /projects/compbio/experiments/casp5/t0132/selected/1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-local-adpstyle5.pw.a2m.gz does not match template SEQRES record for pdb id 1bvqA Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Warning: template sequence in file /projects/compbio/experiments/casp5/t0132/selected/1bvqA/T0132-1bvqA-2track-protein-EBGHSTL-local-adpstyle1.pw.a2m.gz does not match template SEQRES record for pdb id 1bvqA Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Warning: template sequence in file /projects/compbio/experiments/casp5/t0132/selected/1bvqA/T0132-1bvqA-2track-protein-EBGHTL-local-adpstyle5.pw.a2m.gz does not match template SEQRES record for pdb id 1bvqA Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Warning: template sequence in file /projects/compbio/experiments/casp5/t0132/selected/1bvqA/T0132-1bvqA-2track-protein-EBGHTL-local-adpstyle1.pw.a2m.gz does not match template SEQRES record for pdb id 1bvqA Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Error: template not found in alignment. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Error: template not found in alignment. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Error: template not found in alignment. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Error: template not found in alignment. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Error: template not found in alignment. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Error: template not found in alignment. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Error: template not found in alignment. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Error: template not found in alignment. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Error: template not found in alignment. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Error: template not found in alignment. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Error: template not found in alignment. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Error: template not found in alignment. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Error: template not found in alignment. Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Error: template not found in alignment. /projects/compbio/experiments/casp5/scripts-human/casp_summary_report_html \ T0132.t2k.predicted_alignments.rdb T0132.t2k.best-scores.rdb /projects/compbio/experiments/casp5/t0132/selected T0132 \ file:/projects/compbio/experiments/casp5/t0132/selected 0 > T0132.t2k.many_alignments.html /projects/compbio/experiments/casp5/scripts-human/make_undertaker_alignment_list < T0132.t2k.many_alignments.rdb > T0132.t2k.undertaker-align.script /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "T02 Many Alignments Summary" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.many_alignments.html\ T0132.t2k.many_alignments.html >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/format_casp_alignments 5 /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert /projects/compbio/experiments/casp5/t0132/selected T0132 1 < T0132.t2k.top_reported_alignments.rdb > T0132.t2k.casp_top_reported_alignments.rdb Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Warning: template sequence in file /projects/compbio/experiments/casp5/t0132/selected/1bvqA/T0132-1bvqA-2track-protein-STR-local-adpstyle5.pw.a2m.gz does not match template SEQRES record for pdb id 1bvqA ln: `MODEL1.al': File exists ln: `/projects/compbio/experiments/casp5/t0132/selected/MODEL1.al': File exists Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. ln: `MODEL2.al': File exists ln: `/projects/compbio/experiments/casp5/t0132/selected/MODEL2.al': File exists Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. ln: `MODEL3.al': File exists ln: `/projects/compbio/experiments/casp5/t0132/selected/MODEL3.al': File exists Name "main::Score" used only once: possible typo at /projects/compbio/experiments/protein-predict/SAM_T02/casp_convert/a2m-to-caspal.perl line 275. Warning: template sequence in file /projects/compbio/experiments/casp5/t0132/selected/1krs/T0132-1krs-2track-protein-STR-local-adpstyle5.pw.a2m.gz does not match template SEQRES record for pdb id 1krs ln: `MODEL4.al': File exists ln: `/projects/compbio/experiments/casp5/t0132/selected/MODEL4.al': File exists /projects/compbio/experiments/casp5/scripts-human/casp_summary_report_html \ T0132.t2k.top_reported_alignments.rdb T0132.t2k.best-scores.rdb /projects/compbio/experiments/casp5/t0132/selected T0132 \ file:/projects/compbio/experiments/casp5/t0132/selected 1 > T0132.t2k.top_reported_alignments.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "T02 Top Models Summary" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.top_reported_alignments.html\ T0132.t2k.top_reported_alignments.html >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/end_section_summary_html \ >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_section_head_summary_html \ "Undertaker (3d) files" >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Script for dssp coloring in rasmol" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.dssp-color.rasmol T0132.t2k.dssp-color.rasmol \ >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Script for stride coloring in rasmol" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.stride-color.rasmol T0132.t2k.stride-color.rasmol \ >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Script for str coloring in rasmol" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.str-color.rasmol T0132.t2k.str-color.rasmol \ >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Script for alpha coloring in rasmol" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.alpha-color.rasmol T0132.t2k.alpha-color.rasmol \ >> /projects/compbio/experiments/casp5/t0132/selected/summary.html make: *** No rule to make target `dssp_ehl2_color_script', needed by `rasmol_scripts'. /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Multiple alignment for undertaker templates" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k-2track-undertaker.a2m T0132.t2k-2track-undertaker.a2m >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "many alignments for undertaker templates" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.undertaker-align.script T0132.t2k.undertaker-align.script >> /projects/compbio/experiments/casp5/t0132/selected/summary.html make: *** No rule to make target `T0132.t2k.undertaker-align.pdb.gz', needed by `undertaker_show_alignment'. mkdir decoys mkdir: cannot create directory `decoys': File exists make: [frag-a2m] Error 1 (ignored) /projects/compbio/experiments/protein-predict/SAM_T02/scripts/add_summary_html \ "Fragment list for undertaker (from fragfinder)" \ file:/projects/compbio/experiments/casp5/t0132/selected/T0132.t2k.frag T0132.t2k.frag >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/end_section_summary_html \ >> /projects/compbio/experiments/casp5/t0132/selected/summary.html /projects/compbio/experiments/protein-predict/SAM_T02/scripts/end_summary_html \ >> /projects/compbio/experiments/casp5/t0132/selected/summary.html make: Target `default' not remade because of errors.