PFRMAT SS
TARGET T0132
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0132.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 94
METHOD
MODEL 1
M E 0.217
S E 0.246
A E 0.262
N E 0.213
F B 0.288
T B 0.276
D H 0.187
K B 0.202
N E 0.219
G B 0.289
R E 0.238
Q B 0.242
S C 0.252
K H 0.189
G S 0.205
V E 0.495
L E 0.483
L E 0.544
L E 0.493
R E 0.370
T E 0.456
L E 0.484
A E 0.332
M B 0.384
P I 0.183
S H 0.307
D S 0.366
T E 0.274
N C 0.204
A H 0.346
N B 0.267
G S 0.454
D H 0.198
I H 0.199
F H 0.282
G H 0.430
G H 0.708
W H 0.856
I H 0.893
M H 0.906
S H 0.927
Q H 0.874
M H 0.850
D H 0.931
M H 0.948
G H 0.938
G H 0.956
A H 0.966
I H 0.964
L H 0.949
A H 0.882
K H 0.827
E H 0.564
I G 0.309
A B 0.270
H S 0.211
G C 0.327
R E 0.340
V E 0.468
V E 0.539
T E 0.455
V E 0.444
A E 0.381
V A 0.259
E D 0.251
S S 0.290
M E 0.510
N E 0.461
F E 0.349
I E 0.169
K C 0.394
P E 0.306
I E 0.354
S C 0.447
V G 0.393
G S 0.579
D B 0.479
V E 0.577
V E 0.661
C E 0.664
C E 0.531
Y A 0.397
G B 0.405
Q E 0.570
C A 0.594
L E 0.254
K A 0.404
V D 0.306
G D 0.205
R E 0.203
S E 0.413
S E 0.558
I E 0.671
K A 0.500
I E 0.672
K E 0.483
V E 0.693
E E 0.549
V E 0.470
W E 0.356
V E 0.255
K B 0.121
K E 0.293
V H 0.228
A H 0.195
S B 0.224
E B 0.157
P S 0.215
I B 0.204
G S 0.187
E E 0.292
R E 0.289
Y E 0.353
C A 0.394
V E 0.355
T E 0.387
D A 0.395
A E 0.538
V E 0.541
F E 0.588
T E 0.562
F E 0.498
V E 0.519
A E 0.492
V E 0.456
D C 0.817
N H 0.598
N B 0.854
G S 0.647
R B 0.601
S B 0.340
R C 0.472
T B 0.481
I C 0.381
P B 0.272
R B 0.250
E B 0.296
N E 0.317
N B 0.391
Q B 0.350
E B 0.404
L B 0.643
E H 0.843
K H 0.935
A H 0.937
L H 0.954
A H 0.937
L H 0.904
I H 0.868
S H 0.831
E H 0.671
Q H 0.613
P H 0.596
L H 0.502
END