# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1c8uA 285 6.10e-02 1c8uA d.38.1.3 38547 d.38.1.3 38548 1lo7A 141 7.37e-02 1bvqA 141 9.53e-02 1bvqA d.38.1.1 38542 1iq0A 592 5.41e-01 a.27.1.1 66257 c.26.1.1 66258 d.67.2.1 66259 2bpa1 426 1.38e+00 2bpa1 3hhrB 203 1.87e+00 1axiB b.1.2.1 22005 b.1.2.1 22006 1svb 395 2.30e+00 1svb b.1.1.5 21814 f.10.1.1 43827 1hnoA 280 2.55e+00 1hnoA c.14.1.3 61095 1hnuA 280 2.81e+00 1hnoA c.14.1.3 61096 1lylA 504 3.27e+00 1lylA b.40.4.1 25261 d.104.1.1 40717 1axiB 236 3.70e+00 1axiB b.1.2.1 21997 b.1.2.1 21998 1xypA 190 4.37e+00 1axkA b.29.1.11 24327 1eo9B 241 6.13e+00 3pchM b.3.6.1 22826 1jjyA 636 6.21e+00 1jjyA e.26.1.2 63141 1mkaA 171 7.69e+00 1mkaA d.38.1.2 38543 1f4lA 551 8.42e+00 1qqtA a.27.1.1 59648 c.26.1.1 59649 g.41.1.1 59650 1qqtA 551 9.84e+00 1qqtA a.27.1.1 16923 c.26.1.1 31590 g.41.1.1 45175 1ecfB 504 1.17e+01 1ecfB c.61.1.1 34054 d.153.1.1 41821 1gqvA 135 1.27e+01 2pcdM 238 1.31e+01 3pchM b.3.6.1 22760 1hi2A 135 1.37e+01 7rsa d.5.1.1 61057 1egnA 434 1.44e+01 1celA b.29.1.10 59411 6cel 434 1.44e+01 1celA b.29.1.10 24279 1iicA 422 1.60e+01 1nmtA d.108.1.2 62422 d.108.1.2 62423 1mpgA 282 1.68e+01 1mpgA a.96.1.3 18747 d.129.1.2 41296 1e1oA 504 1.68e+01 1lylA b.40.4.1 25258 d.104.1.1 40714 1ibcB 88 1.75e+01 1pauB 1koqA 253 1.75e+01 2cba b.74.1.1 27964 1hdkA 141 1.93e+01 b.29.1.3 65807 1lcl 142 1.93e+01 1lcl b.29.1.3 24216 1bmqB 88 1.95e+01 1pauB 3pcgM 238 2.02e+01 3pchM b.3.6.1 22742 1krs 120 2.02e+01 1krs b.40.4.1 25256 1cor 82 2.03e+01 451c a.3.1.1 15903 1k2fA 190 2.03e+01 b.8.1.2 68054 3pchM 238 2.05e+01 3pchM b.3.6.1 22748 1gaxA 862 2.07e+01 1gaxA a.27.1.1 16928 b.51.1.1 26893 c.26.1.1 31595 1ecfA 504 2.08e+01 1ecfB c.61.1.1 34053 d.153.1.1 41820 2scuB 388 2.09e+01 2scuB c.23.4.1 31141 d.142.1.4 41562 1bk1 184 2.11e+01 1axkA b.29.1.11 24340 1e32A 458 2.20e+01 1e32A b.52.2.3 59183 c.37.1.13 59184 d.31.1.1 59185 1cr5A 189 2.30e+01 1cr5A b.52.2.3 26931 d.31.1.1 38465 3fib 249 2.37e+01 3fib d.171.1.1 42455 2fibA 269 2.38e+01 3fib d.171.1.1 42457 1fib 269 2.41e+01 3fib d.171.1.1 42456 1b8aA 438 2.49e+01 1b8aA b.40.4.1 25244 d.104.1.1 40765 1b64 91 2.55e+01 1b64 d.58.12.1 39306 1celA 434 2.69e+01 1celA b.29.1.10 24280 1b65A 375 2.69e+01 1b65A d.154.1.1 42020 2sli 679 2.72e+01 2sli b.29.1.9 24274 b.68.1.1 27611 4sli 679 2.72e+01 2sli b.29.1.9 24275 b.68.1.1 27612 1b87A 181 2.74e+01 1b87A d.108.1.1 40797 1bzyA 217 3.00e+01 1qk3A c.61.1.1 34071 2rmpA 361 3.01e+01 2rmpA b.50.1.2 26825 1gcvA 140 3.08e+01 1cg5B a.1.1.2 15410 1fzoA 274 3.18e+01 1agdA b.1.1.2 60155 d.19.1.1 60156 1eqkA 102 3.26e+01 1eqkA d.17.1.2 37998 1plq 258 3.30e+01 1plq d.131.1.2 41388 d.131.1.2 41389 2ae2A 260 3.33e+01 1bdb c.2.1.2 29945 1fil 139 3.35e+01 1pne d.110.1.1 40869 4enl 436 3.45e+01 4enl c.1.11.1 29202 d.54.1.1 38846 1dqeA 137 3.49e+01 1dqeA a.39.2.1 17388 1whi 122 3.71e+01 1whi b.39.1.1 24810 1lybA 97 3.77e+01 1smrA b.50.1.2 26857 1g2oA 268 3.82e+01 1b8oA c.56.2.1 60228 1ejfA 125 3.86e+01 1ejfA b.15.1.2 23683 1lla 628 3.90e+01 1lla a.85.1.1 18485 a.86.1.1 18496 b.1.1.5 21861 3pchA 200 3.92e+01 3pchA b.3.6.1 22653 3pcgA 200 3.92e+01 3pchA b.3.6.1 22647 1h5uA 842 3.99e+01 1a8i c.87.1.4 60655