PFRMAT SS TARGET T0132 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0132.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 89 METHOD MODEL 1 M C 0.804 S C 0.620 A C 0.550 N C 0.455 F C 0.482 T C 0.513 D C 0.441 K C 0.486 N C 0.363 G E 0.400 R C 0.472 Q C 0.522 S T 0.586 K T 0.750 G T 0.708 V E 0.571 L E 0.855 L E 0.949 L E 0.963 R E 0.945 T E 0.903 L E 0.871 A E 0.650 M C 0.450 P T 0.361 S G 0.438 D G 0.467 T T 0.343 N T 0.705 A T 0.791 N T 0.841 G T 0.730 D E 0.543 I E 0.700 F E 0.436 G H 0.420 G H 0.598 W H 0.976 I H 0.984 M H 0.990 S H 0.988 Q H 0.989 M H 0.992 D H 0.991 M H 0.997 G H 0.998 G H 0.998 A H 0.998 I H 0.998 L H 0.998 A H 0.996 K H 0.992 E H 0.979 I H 0.907 A T 0.471 H T 0.741 G T 0.713 R E 0.396 V E 0.868 V E 0.954 T E 0.977 V E 0.961 A E 0.914 V E 0.736 E T 0.468 S E 0.525 M E 0.831 N E 0.895 F E 0.911 I E 0.828 K E 0.854 P E 0.837 I E 0.713 S E 0.496 V T 0.782 G T 0.884 D E 0.554 V E 0.949 V E 0.990 C E 0.994 C E 0.994 Y E 0.987 G E 0.975 Q E 0.982 C E 0.970 L E 0.948 K E 0.869 V E 0.513 G T 0.654 R T 0.474 S E 0.697 S E 0.858 I E 0.969 K E 0.988 I E 0.990 K E 0.992 V E 0.988 E E 0.977 V E 0.931 W E 0.877 V E 0.736 K E 0.464 K T 0.423 V T 0.491 A T 0.494 S T 0.579 E T 0.601 P T 0.519 I T 0.504 G C 0.416 E E 0.357 R E 0.575 Y E 0.727 C E 0.793 V E 0.832 T E 0.840 D E 0.905 A E 0.950 V E 0.982 F E 0.990 T E 0.988 F E 0.977 V E 0.945 A E 0.858 V E 0.658 D T 0.759 N T 0.984 N T 0.987 G T 0.945 R C 0.609 S E 0.453 R C 0.435 T C 0.544 I C 0.635 P C 0.469 R C 0.467 E C 0.604 N C 0.650 N C 0.659 Q C 0.675 E C 0.821 L C 0.823 E H 0.912 K H 0.938 A H 0.954 L H 0.936 A H 0.908 L H 0.912 I H 0.842 S H 0.849 E H 0.745 Q C 0.455 P C 0.618 L C 0.927 END