PFRMAT SS TARGET T0132 AUTHOR 4069-6308-1312 METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 7 (1 EBGHSTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0132.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 89 METHOD MODEL 1 M C 0.998 S C 0.764 A C 0.520 N C 0.487 F C 0.519 T C 0.552 D C 0.421 K C 0.473 N C 0.429 G E 0.403 R E 0.421 Q C 0.520 S C 0.458 K T 0.488 G S 0.363 V E 0.605 L E 0.933 L E 0.968 L E 0.959 R E 0.945 T E 0.914 L E 0.882 A E 0.787 M E 0.470 P C 0.349 S T 0.396 D G 0.334 T C 0.315 N C 0.435 A T 0.391 N T 0.560 G T 0.249 D H 0.358 I H 0.577 F H 0.761 G H 0.876 G H 0.933 W H 0.972 I H 0.974 M H 0.963 S H 0.961 Q H 0.964 M H 0.969 D H 0.980 M H 0.986 G H 0.992 G H 0.992 A H 0.994 I H 0.996 L H 0.996 A H 0.994 K H 0.985 E H 0.938 I H 0.818 A H 0.424 H T 0.328 G S 0.556 R C 0.496 V E 0.642 V E 0.943 T E 0.971 V E 0.972 A E 0.950 V E 0.853 E E 0.598 S E 0.635 M E 0.849 N E 0.927 F E 0.920 I E 0.852 K E 0.706 P E 0.764 I E 0.754 S E 0.602 V T 0.414 G T 0.745 D C 0.412 V E 0.782 V E 0.961 C E 0.988 C E 0.982 Y E 0.984 G E 0.978 Q E 0.981 C E 0.957 L E 0.926 K E 0.839 V E 0.452 G S 0.359 R S 0.489 S C 0.336 S E 0.838 I E 0.969 K E 0.991 I E 0.968 K E 0.984 V E 0.991 E E 0.994 V E 0.984 W E 0.955 V E 0.784 K E 0.399 K C 0.354 V C 0.276 A T 0.270 S C 0.313 E S 0.300 P T 0.371 I T 0.337 G C 0.357 E E 0.382 R E 0.658 Y E 0.810 C E 0.890 V E 0.902 T E 0.921 D E 0.937 A E 0.950 V E 0.972 F E 0.985 T E 0.986 F E 0.971 V E 0.963 A E 0.907 V E 0.825 D C 0.673 N T 0.875 N T 0.929 G S 0.640 R C 0.663 S E 0.367 R C 0.468 T C 0.443 I C 0.540 P C 0.728 R C 0.660 E C 0.549 N C 0.611 N C 0.716 Q C 0.733 E C 0.686 L C 0.764 E H 0.902 K H 0.921 A H 0.958 L H 0.977 A H 0.968 L H 0.957 I H 0.913 S H 0.817 E H 0.643 Q H 0.389 P C 0.556 L C 0.998 END