PFRMAT SS TARGET T0132 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 11 (1 ABCDEFGHIST ) METHOD The input amino acid frequencies were determined from METHOD alignment T0132.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 89 METHOD MODEL 1 M E 0.220 S B 0.248 A E 0.262 N E 0.217 F B 0.243 T E 0.194 D B 0.220 K B 0.329 N E 0.241 G B 0.282 R E 0.261 Q B 0.253 S C 0.301 K H 0.199 G S 0.249 V E 0.506 L E 0.496 L E 0.590 L E 0.472 R E 0.380 T E 0.435 L E 0.465 A E 0.313 M B 0.375 P I 0.172 S H 0.312 D S 0.361 T E 0.276 N C 0.241 A H 0.377 N B 0.272 G S 0.427 D H 0.216 I H 0.205 F H 0.279 G H 0.398 G H 0.703 W H 0.860 I H 0.897 M H 0.913 S H 0.930 Q H 0.887 M H 0.858 D H 0.928 M H 0.946 G H 0.932 G H 0.950 A H 0.964 I H 0.964 L H 0.953 A H 0.894 K H 0.848 E H 0.634 I G 0.308 A B 0.219 H S 0.202 G C 0.288 R E 0.356 V E 0.475 V E 0.536 T A 0.470 V E 0.403 A E 0.359 V A 0.279 E D 0.226 S S 0.316 M E 0.514 N E 0.454 F E 0.325 I B 0.165 K C 0.411 P B 0.317 I E 0.379 S C 0.450 V G 0.340 G S 0.482 D B 0.463 V E 0.599 V E 0.660 C E 0.653 C E 0.517 Y A 0.360 G B 0.391 Q E 0.524 C A 0.595 L E 0.249 K A 0.422 V D 0.268 G D 0.208 R E 0.185 S E 0.407 S E 0.513 I E 0.672 K A 0.525 I E 0.672 K A 0.490 V E 0.684 E E 0.577 V A 0.449 W A 0.347 V E 0.197 K H 0.168 K E 0.222 V E 0.180 A H 0.202 S E 0.181 E B 0.210 P H 0.196 I H 0.178 G S 0.196 E E 0.273 R E 0.303 Y E 0.343 C A 0.356 V E 0.347 T E 0.372 D A 0.375 A E 0.529 V E 0.567 F E 0.548 T E 0.549 F E 0.524 V E 0.492 A E 0.477 V E 0.447 D C 0.800 N H 0.579 N B 0.846 G S 0.680 R B 0.600 S B 0.348 R C 0.452 T B 0.465 I C 0.339 P B 0.274 R B 0.246 E B 0.319 N E 0.327 N B 0.378 Q B 0.334 E B 0.404 L B 0.639 E H 0.838 K H 0.927 A H 0.927 L H 0.938 A H 0.908 L H 0.860 I H 0.770 S H 0.713 E H 0.451 Q H 0.253 P H 0.361 L H 0.282 END