PFRMAT SS
TARGET T0132
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0132.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 89
METHOD
MODEL 1
M E 0.220
S B 0.248
A E 0.262
N E 0.217
F B 0.243
T E 0.194
D B 0.220
K B 0.329
N E 0.241
G B 0.282
R E 0.261
Q B 0.253
S C 0.301
K H 0.199
G S 0.249
V E 0.506
L E 0.496
L E 0.590
L E 0.472
R E 0.380
T E 0.435
L E 0.465
A E 0.313
M B 0.375
P I 0.172
S H 0.312
D S 0.361
T E 0.276
N C 0.241
A H 0.377
N B 0.272
G S 0.427
D H 0.216
I H 0.205
F H 0.279
G H 0.398
G H 0.703
W H 0.860
I H 0.897
M H 0.913
S H 0.930
Q H 0.887
M H 0.858
D H 0.928
M H 0.946
G H 0.932
G H 0.950
A H 0.964
I H 0.964
L H 0.953
A H 0.894
K H 0.848
E H 0.634
I G 0.308
A B 0.219
H S 0.202
G C 0.288
R E 0.356
V E 0.475
V E 0.536
T A 0.470
V E 0.403
A E 0.359
V A 0.279
E D 0.226
S S 0.316
M E 0.514
N E 0.454
F E 0.325
I B 0.165
K C 0.411
P B 0.317
I E 0.379
S C 0.450
V G 0.340
G S 0.482
D B 0.463
V E 0.599
V E 0.660
C E 0.653
C E 0.517
Y A 0.360
G B 0.391
Q E 0.524
C A 0.595
L E 0.249
K A 0.422
V D 0.268
G D 0.208
R E 0.185
S E 0.407
S E 0.513
I E 0.672
K A 0.525
I E 0.672
K A 0.490
V E 0.684
E E 0.577
V A 0.449
W A 0.347
V E 0.197
K H 0.168
K E 0.222
V E 0.180
A H 0.202
S E 0.181
E B 0.210
P H 0.196
I H 0.178
G S 0.196
E E 0.273
R E 0.303
Y E 0.343
C A 0.356
V E 0.347
T E 0.372
D A 0.375
A E 0.529
V E 0.567
F E 0.548
T E 0.549
F E 0.524
V E 0.492
A E 0.477
V E 0.447
D C 0.800
N H 0.579
N B 0.846
G S 0.680
R B 0.600
S B 0.348
R C 0.452
T B 0.465
I C 0.339
P B 0.274
R B 0.246
E B 0.319
N E 0.327
N B 0.378
Q B 0.334
E B 0.404
L B 0.639
E H 0.838
K H 0.927
A H 0.927
L H 0.938
A H 0.908
L H 0.860
I H 0.770
S H 0.713
E H 0.451
Q H 0.253
P H 0.361
L H 0.282
END