%  SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/hmmscore v3.3.1 (December 20, 2001) compiled 04/11/02_15:33:57
%  (c) 1992-2001 Regents of the University of California, Santa Cruz
%
%          Sequence Alignment and Modeling Software System
%         http://www.cse.ucsc.edu/research/compbio/sam.html
%
% ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
% R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
%  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
% K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
%  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
% A. Krogh et al., Hidden Markov models in computational biology:
%  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
% ---------------------------------------------------------------------
%  T0132.t2k-100-30-stride-ebghtl   Host: bray    Thu Jun  6 12:42:52 2002
%  karplus                          Dir:  /projects/compbio/experiments/casp5/t0132
% ---------------------------------------------------------------------
% Inserted Files: 
% Database Files:  /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.2ds
%

MODLIBMOD T0132.t2k-100-30-stride-ebghtl T0132.t2k-100-30-stride-ebghtl model number 1
% Calibration data for 6078 database sequences
% 2427 of 6078 scores > calibrate_threshold (      0) used.
trackmod T0132.t2k-w0.5.mod,T0132.t2k.stride-ebghtl.mod
trackcoeff 1.0,0.3
alphabet protein,EBGHTL
lambda 1.336281
tau 0.819089
sw 2
dpstyle 0
jumpinprob 1.000000
jumpoutprob 1.000000
subtractnull 4
FIMmethodscore -6
insertmethodscore 0
adjust_score 2
ENDMODLIBMOD