# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lo7A 141 6.27e-04 1bvqA 141 7.59e-04 1bvqA d.38.1.1 38542 1c8uA 285 3.37e-02 1c8uA d.38.1.3 38547 d.38.1.3 38548 2bpa1 426 2.76e-01 2bpa1 1xypA 190 1.27e+00 1axkA b.29.1.11 24327 1iq0A 592 1.61e+00 a.27.1.1 66257 c.26.1.1 66258 d.67.2.1 66259 1hnoA 280 2.07e+00 1hnoA c.14.1.3 61095 1hnuA 280 2.21e+00 1hnoA c.14.1.3 61096 1lylA 504 2.34e+00 1lylA b.40.4.1 25261 d.104.1.1 40717 1koqA 253 2.92e+00 2cba b.74.1.1 27964 3hhrB 203 3.07e+00 1axiB b.1.2.1 22005 b.1.2.1 22006 1axiB 236 3.93e+00 1axiB b.1.2.1 21997 b.1.2.1 21998 1eo9B 241 4.41e+00 3pchM b.3.6.1 22826 1dqeA 137 4.80e+00 1dqeA a.39.2.1 17388 1xnb 185 5.12e+00 1axkA b.29.1.11 24308 1al0F 426 5.20e+00 2bpa1 b.10.1.1 23274 2pcdM 238 5.77e+00 3pchM b.3.6.1 22760 1cb0A 283 6.96e+00 1cb0A c.56.2.1 33790 1f4lA 551 6.98e+00 1qqtA a.27.1.1 59648 c.26.1.1 59649 g.41.1.1 59650 1eqkA 102 7.19e+00 1eqkA d.17.1.2 37998 1hjrA 158 7.20e+00 1hjrA c.55.3.6 33727 1jjyA 636 7.77e+00 1jjyA e.26.1.2 63141 1kopA 223 8.11e+00 2cba b.74.1.1 27966 1qqtA 551 8.29e+00 1qqtA a.27.1.1 16923 c.26.1.1 31590 g.41.1.1 45175 3pcgM 238 8.31e+00 3pchM b.3.6.1 22742 3pchM 238 8.38e+00 3pchM b.3.6.1 22748 1axkA 394 9.08e+00 1axkA b.29.1.2 24181 b.29.1.11 24315 1lcl 142 9.37e+00 1lcl b.29.1.3 24216 1hdkA 141 9.37e+00 b.29.1.3 65807 1b65A 375 1.06e+01 1b65A d.154.1.1 42020 1mkaA 171 1.13e+01 1mkaA d.38.1.2 38543 1gqvA 135 1.14e+01 1sltA 134 1.18e+01 1c1lA b.29.1.3 24186 2ae2A 260 1.28e+01 1bdb c.2.1.2 29945 1hi2A 135 1.28e+01 7rsa d.5.1.1 61057 1ga1A 372 1.35e+01 1ga1A c.41.1.2 32557 1ga6A 372 1.38e+01 1ga1A c.41.1.2 32556 1e1oA 504 1.42e+01 1lylA b.40.4.1 25258 d.104.1.1 40714 1e32A 458 1.44e+01 1e32A b.52.2.3 59183 c.37.1.13 59184 d.31.1.1 59185 1jkeA 145 1.56e+01 c.110.1.1 66791 1svb 395 1.59e+01 1svb b.1.1.5 21814 f.10.1.1 43827 1bzyA 217 1.62e+01 1qk3A c.61.1.1 34071 1dabA 539 1.81e+01 1dabA b.80.1.7 28049 1h5uA 842 1.89e+01 1a8i c.87.1.4 60655 1cskA 71 1.97e+01 1ckaA b.34.2.1 24513 1ecfB 504 2.05e+01 1ecfB c.61.1.1 34054 d.153.1.1 41821 1czyA 168 2.10e+01 1d0aB b.8.1.1 23220 h.1.2.1 45427 1d0aB 168 2.11e+01 1d0aB b.8.1.1 23224 h.1.2.1 45431 1czyC 168 2.13e+01 1d0aB b.8.1.1 23222 h.1.2.1 45429 1ca9A 192 2.15e+01 1d0aB b.8.1.1 23244 h.1.2.1 45451 1fjgQ 105 2.23e+01 1fjfQ b.40.4.5 25352 1b64 91 2.27e+01 1b64 d.58.12.1 39306 1tf4A 605 2.28e+01 1tf4A a.102.1.2 18827 b.2.2.2 22393 1lla 628 2.30e+01 1lla a.85.1.1 18485 a.86.1.1 18496 b.1.1.5 21861 1ca4A 168 2.41e+01 1d0aB b.8.1.1 23238 h.1.2.1 45445 1k32A 1045 2.47e+01 b.36.1.3 68068 b.68.7.1 68069 b.69.9.1 68070 c.14.1.2 68071 1cor 82 2.55e+01 451c a.3.1.1 15903 1sltB 134 2.57e+01 1c1lA b.29.1.3 24187 1g2oA 268 2.60e+01 1b8oA c.56.2.1 60228 1ibcB 88 2.73e+01 1pauB 1aipE 405 2.75e+01 1efcA b.43.3.1 25699 b.44.1.1 25739 c.37.1.8 32134 1exmA 405 2.77e+01 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1slaA 134 2.80e+01 1c1lA b.29.1.3 24196 1caj 260 2.81e+01 2cba b.74.1.1 27841 1ezvI 55 2.95e+01 1be3J f.2.1.8 59553 1qq8A 214 3.01e+01 1qq8A a.132.1.1 19508 1pyaB 228 3.10e+01 1pyaB 1bmqB 88 3.12e+01 1pauB 3fib 249 3.19e+01 3fib d.171.1.1 42455 2fibA 269 3.19e+01 3fib d.171.1.1 42457 1fib 269 3.22e+01 3fib d.171.1.1 42456 1egnA 434 3.29e+01 1celA b.29.1.10 59411 6cel 434 3.30e+01 1celA b.29.1.10 24279 2cba 260 3.39e+01 2cba b.74.1.1 27821 2scuB 388 3.42e+01 2scuB c.23.4.1 31141 d.142.1.4 41562 1ha3A 405 3.47e+01 1efcA b.43.3.1 60869 b.44.1.1 60870 c.37.1.8 60871 1mdc 133 3.53e+01 1hmt b.60.1.2 27198 2hvm 273 3.74e+01 1cnv c.1.8.5 28985 1f42A 306 3.76e+01 1f42A b.1.1.4 59636 b.1.2.1 59637 b.1.2.1 59638 1bdo 80 3.82e+01 1bdo b.84.1.1 28214