PFRMAT SS
TARGET T0129
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0129.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 6
METHOD
MODEL 1
M C 0.855
L C 0.670
I C 0.521
S C 0.422
H H 0.509
S H 0.609
D H 0.852
L H 0.934
N H 0.938
Q H 0.940
Q H 0.944
L H 0.926
K H 0.859
S H 0.833
A H 0.755
G C 0.591
I C 0.550
G C 0.655
F C 0.654
N C 0.826
A H 0.958
T H 0.981
E H 0.978
L H 0.980
H H 0.978
G H 0.920
F H 0.924
L H 0.902
S H 0.835
G H 0.467
L H 0.395
L H 0.377
C C 0.290
G C 0.502
G T 0.524
L T 0.603
K T 0.565
D T 0.408
Q H 0.496
S H 0.708
W H 0.929
L H 0.964
P H 0.972
L H 0.977
L H 0.971
Y H 0.957
Q H 0.941
F H 0.896
S H 0.611
N H 0.402
D T 0.482
N T 0.533
H T 0.443
A C 0.415
Y C 0.472
P H 0.383
T H 0.669
G H 0.782
L H 0.911
V H 0.951
Q H 0.940
P H 0.955
V H 0.961
T H 0.969
E H 0.968
L H 0.970
Y H 0.968
E H 0.967
Q H 0.961
I H 0.925
S H 0.860
Q H 0.838
T H 0.822
L H 0.780
S H 0.671
D H 0.387
V T 0.605
E T 0.584
G T 0.507
F E 0.755
T E 0.947
F E 0.984
E E 0.976
L E 0.950
G E 0.863
L E 0.588
T T 0.577
E T 0.806
D T 0.962
E T 0.950
N T 0.661
V T 0.401
F H 0.547
T H 0.571
Q H 0.865
A H 0.962
D H 0.965
S H 0.977
L H 0.989
S H 0.990
D H 0.980
W H 0.971
A H 0.970
N H 0.928
Q H 0.920
F H 0.883
L H 0.861
L H 0.799
G H 0.651
I H 0.464
G C 0.370
L T 0.374
A T 0.354
Q T 0.414
P T 0.353
E T 0.355
L T 0.349
A T 0.380
K T 0.416
E H 0.387
K H 0.482
G H 0.510
E H 0.766
I H 0.981
G H 0.985
E H 0.983
A H 0.990
V H 0.991
D H 0.985
D H 0.981
L H 0.993
Q H 0.990
D H 0.985
I H 0.986
C H 0.967
Q H 0.947
L H 0.858
G C 0.747
Y C 0.674
D T 0.740
E T 0.802
D T 0.776
D T 0.740
N C 0.593
E H 0.839
E H 0.880
E H 0.896
L H 0.956
A H 0.977
E H 0.969
A H 0.980
L H 0.992
E H 0.996
E H 0.995
I H 0.994
I H 0.999
E H 0.998
Y H 1.000
V H 1.000
R H 1.000
T H 1.000
I H 1.000
A H 1.000
M H 0.999
L H 0.997
F H 0.988
Y H 0.952
S H 0.880
H H 0.821
F H 0.374
N C 0.555
E C 0.592
G C 0.624
E C 0.650
I C 0.598
E C 0.650
S C 0.519
K C 0.624
P C 0.647
V C 0.613
L C 0.714
H C 0.955
END