Sequence numbers correspond to the following labels:

1. • T0129 HI0817, H. influenzae
2. • gi|15803444|ref|NP_289477.1|_8:194 (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7 EDL933]
   • gi|15833034|ref|NP_311807.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
   • gi|16130811|ref|NP_417385.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
   • gi|421140|pir||A47020 hypothetical 21.5K protein (pepP-ssr intergenic region) - Escherichia coli
   • gi|216626|dbj|BAA14324.1| (D90281) ORF194 protein [Escherichia coli]
   • gi|882439|gb|AAA69077.1| (U28377) ORF_f194 [Escherichia coli]
   • gi|1789276|gb|AAC75947.1| (AE000374) orf, hypothetical protein [Escherichia coli K12]
   • gi|12517439|gb|AAG58036.1|AE005521_4 (AE005521) orf, hypothetical protein [Escherichia coli O157:H7 EDL933]
   • gi|13363252|dbj|BAB37203.1| (AP002563) hypothetical protein [Escherichia coli O157:H7]
3. • gi|13878941sp|P25533|YGFB_ECOLI_6:192 Hypothetical protein ygfB
4. • gi|16766360|ref|NP_461975.1|_8:194 (NC_003197) putative cytoplasmic protein [Salmonella typhimurium LT2]
   • gi|16421610|gb|AAL21934.1| (AE008840) putative cytoplasmic protein [Salmonella typhimurium LT2]
5. • gi|16761840|ref|NP_457457.1|_8:194 (NC_003198) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi]
   • gi|16504142|emb|CAD02889.1| (AL627277) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi]
6. • gi|16121216|ref|NP_404529.1|_7:192 (NC_003143) putative exported protein [Yersinia pestis]
   • gi|15978982|emb|CAC89755.1| (AJ414145) putative exported protein [Yersinia pestis]
7. • gi|15603588|ref|NP_246662.1|_2:182 (NC_002663) unknown [Pasteurella multocida]
   • gi|13878881sp|Q9CKA2|YH23_PASMU Hypothetical protein PM1723
   • gi|12722136|gb|AAK03807.1| (AE006209) unknown [Pasteurella multocida]
8. • gi|16272758|ref|NP_438977.1|_1:182 (NC_000907) conserved hypothetical protein [Haemophilus influenzae Rd]
   • gi|1176090sp|P44882|YGFB_HAEIN Hypothetical protein HI0817
   • gi|1074520|pir||I64158 hypothetical protein HI0817 - Haemophilus influenzae (strain Rd KW20)
   • gi|1573830|gb|AAC22476.1| (U32764) conserved hypothetical protein [Haemophilus influenzae Rd]
9. • gi|18282497sp|Q9KP97|YO76_VIBCH_5:191 Hypothetical protein VC2476
10. • gi|15600418|ref|NP_253912.1|_5:184 (NC_002516) hypothetical protein [Pseudomonas aeruginosa]
    • gi|13878884sp|Q9HTW5|YGFB_PSEAE Hypothetical protein PA5225
    • gi|11350394|pir||A82993 hypothetical protein PA5225 [imported] - Pseudomonas aeruginosa (strain PAO1)
    • gi|9951533|gb|AAG08610.1|AE004935_7 (AE004935) hypothetical protein [Pseudomonas aeruginosa]
11. • gi|15642472|ref|NP_232105.1|_2:157 (NC_002505) conserved hypothetical protein [Vibrio cholerae]
    • gi|11354711|pir||F82071 conserved hypothetical protein VC2476 [imported] - Vibrio cholerae (group O1 strain N16961)
    • gi|9657055|gb|AAF95618.1| (AE004317) conserved hypothetical protein [Vibrio cholerae]

              10        20        30          40        50        60   
              |         |         |           |         |         |   
   1 MLISHSDLNQQLKSAGIGFNATELHGFLSGLLCGG..LKDQSWLPLLYQFSNDNHAYPTGLVQPV
   2 EMPGYNEMNQYLNQQGTGLTPAEMHGLISGMICGG..NDDSSWLPLLHDLTNEGMAFGHELAQAL
   3 EMPGYNEMNQYLNQQGTGLTPAEMHGLISGMICGG..NDDSSWLPLLHDLTNEGMAFGHELAQAL
   4 EMPGYNEMNRFLNQQGAGLTPAEMHGLISGMICGG..NNDSSWQPLLHDLTNEGLAFGHELAQAL
   5 EMPGYDEMNRFLNQQGAGLTPAEMHGLISGMICGG..NNDSSWQPLLHDLTNEGLAFGHELAQAL
   6 -LPTYPSLALALSQQAVALTPAEMHGLISGMLCGG..SKDNGWQTLVHDLTNEGVAFPQALSLPL
   7 --SSYSDFSQQLKTAGIALSAAELHGFLTGLICGG..IHDQSWQPLLFQFTNENHAYPTALLQEV
   8 MLISHSDLNQQLKSAGIGFNATELHGFLSGLLCGG..LKDQSWLPLLYQFSNDNHAYPTGLVQPV
   9 RLPAYPALANELRTASLGINPAELQGLLTGMLSGGlsLNDKSWQALVFDYTNDGMGWPIGALASA
  10 -NSAYSAFSSLLAEAAMPVSPAELHGHLLGRVCAGagFDEAAWQHAAAELL--GGAPGERLKAAL
  11 -------------------------------LSGGlsLNDKSWQALVFDYTNDGMGWPIGALASA


           70        80        90          100       110       120     
           |         |         |            |         |         |     
   1 TELYEQISQTLSDVEGFTFELGLTEDEN...VFTQADSLSDWANQFLLGIGLAQPELAKEKGEIG
   2 RKMHSATSDALQD-DGFLFQLYLPDGDDvs.VFDRADALAGWVNHFLLGLGVTQPKLDKVTGETG
   3 RKMHSATSDALQD-DGFLFQLYLPDGDDvs.VFDRADALAGWVNHFLLGLGVTQPKLDKVTGETG
   4 RKMHAATSDALED-DGFLFQLYLPEGDDvs.VFDRADALAGWVNHFLLGLGVTQPKLDKVTGETG
   5 RKMHAATSDALED-DGFLFQLYLPEGDDvs.VFDRADALAGWVNHFLLGLGVTQPKLDKVTGETG
   6 QQLHEATQEALEN-EGFMFQLLIPEGEDvt.VFDRADALSGWVNHFLLGLGMLQPKLAQVKDEVG
   7 TQIQQHISKKLADIDGFDFELWLPENEDd..VFTRADALSEWTNHFLLGLGLAQPKLDKEKGDIG
   8 TELYEQISQTLSDVEGFTFELGLTEDEN...VFTQADSLSDWANQFLLGIGLAQPELAKEKGEIG
   9 EQILLAMSAQLVDTD-FELSLLLPEGEGeeaLFELADAVAEWINHFISGLGLSGANLKHASVEAK
  10 SGLLGMVRQDFSAGE-VAVVMLLPDDETp..LAQRTEALGQWCQGFLAGFGLTARE-GSLTGEAE
  11 EQILLAMSAQLVDTD-FELSLLLPEGEGeeaLFELADAVAEWINHFISGLGLSGANLKHASVEAK


        130       140       150       160       170             180  
         |         |         |         |         |               |  
   1 EAVDDLQDICQLGYDEDDNEEELAEALEEIIEYVRTIAMLFYSHFN.EG.EIE....SKPVLH
   2 EAIDDLRNIAQLGYDEDEDQEELEMSLEEIIEYVRVAALLCHDTFT.HP.QPTapevQKPTLH
   3 EAIDDLRNIAQLGYDEDEDQEELEMSLEEIIEYVRVAALLCHDTFT.HP.QPTapevQKPTLH
   4 EAIDDLRNIAQLGYDESEDQEELEMSLEEIIEYVRVAALLCHDTFT.RQ.QPTapevRKPTLH
   5 EAIDDLRNIAQLGYDESEDQEELEMSLEEIIEYVRVAALLCHDTFT.RQ.QPTapevRKPTLH
   6 EAIDDLRNIAQLGYDEDEDQEELAQSLEEVVEYVRVAAILCHIEFT.QQ.KPTapemHKPTLH
   7 EAIDDLHDICQLGYDESDDKEELSEALEEIIEYVRTLACLLFTHFQ.PQ.LPE....QKPVLH
   8 EAVDDLQDICQLGYDEDDNEEELAEALEEIIEYVRTIAMLFYSHFN.EG.EIE....SKPVLH
   9 EALEDLEEMSKLGIDEEDDLAEQAELLEQVIEHIKACVLVLHAEFGvKP.EQD....TKPTVH
  10 EVLQDMAAIAQVQGQLEDSEDGETDYME-VMEYLRVAPLLLFAECG.KPlEPA....PKPSLH
  11 EALEDLEEMSKLGIDEEDDLAEQAELLEQVIEHIKACVLVLHAEFGvKP.EQD....TKPTVH