PFRMAT SS
TARGET T0129
AUTHOR 4069-6308-1312
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0129.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 6
METHOD
MODEL 1
M C 0.983
L C 0.742
I C 0.497
S C 0.448
H H 0.439
S H 0.835
D H 0.866
L H 0.913
N H 0.946
Q H 0.946
Q H 0.934
L H 0.878
K H 0.763
S H 0.643
A H 0.470
G T 0.357
I S 0.355
G C 0.377
F C 0.801
N C 0.903
A H 0.915
T H 0.875
E H 0.892
L H 0.943
H H 0.877
G H 0.858
F H 0.878
L H 0.834
S H 0.678
G H 0.509
L H 0.469
L H 0.314
C T 0.254
G C 0.310
G T 0.332
L C 0.330
K C 0.501
D C 0.250
Q H 0.492
S H 0.661
W H 0.956
L H 0.976
P H 0.983
L H 0.990
L H 0.986
Y H 0.973
Q H 0.942
F H 0.809
S H 0.483
N C 0.375
D T 0.491
N T 0.542
H C 0.591
A C 0.512
Y C 0.550
P H 0.508
T H 0.697
G H 0.633
L H 0.695
V H 0.792
Q H 0.821
P H 0.886
V H 0.960
T H 0.973
E H 0.976
L H 0.983
Y H 0.987
E H 0.976
Q H 0.967
I H 0.958
S H 0.930
Q H 0.869
T H 0.768
L H 0.493
S H 0.325
D T 0.392
V C 0.373
E S 0.397
G E 0.393
F E 0.762
T E 0.965
F E 0.980
E E 0.983
L E 0.964
G E 0.881
L E 0.459
T C 0.734
E T 0.771
D T 0.661
E C 0.532
N C 0.627
V H 0.291
F H 0.446
T H 0.491
Q H 0.618
A H 0.766
D H 0.835
S H 0.871
L H 0.964
S H 0.980
D H 0.983
W H 0.983
A H 0.977
N H 0.957
Q H 0.929
F H 0.926
L H 0.874
L H 0.716
G H 0.529
I H 0.392
G T 0.405
L C 0.265
A C 0.408
Q H 0.477
P H 0.580
E H 0.569
L H 0.636
A H 0.688
K H 0.686
E H 0.739
K H 0.704
G H 0.725
E H 0.911
I H 0.961
G H 0.975
E H 0.969
A H 0.971
V H 0.965
D H 0.953
D H 0.943
L H 0.993
Q H 0.991
D H 0.986
I H 0.986
C H 0.967
Q H 0.747
L T 0.558
G T 0.402
Y C 0.614
D C 0.774
E H 0.402
D H 0.377
D H 0.414
N C 0.417
E H 0.930
E H 0.906
E H 0.908
L H 0.926
A H 0.917
E H 0.917
A H 0.902
L H 0.950
E H 0.969
E H 0.988
I H 0.994
I H 0.998
E H 0.997
Y H 0.996
V H 0.997
R H 0.997
T H 0.997
I H 0.997
A H 0.994
M H 0.983
L H 0.958
F H 0.917
Y H 0.768
S H 0.599
H H 0.483
F H 0.263
N C 0.443
E S 0.470
G C 0.669
E C 0.774
I C 0.868
E C 0.800
S C 0.506
K C 0.482
P C 0.725
V C 0.661
L C 0.833
H C 0.999
END