PFRMAT SS TARGET T0129 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 11 (1 ABCDEFGHIST ) METHOD The input amino acid frequencies were determined from METHOD alignment T0129.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 6 METHOD MODEL 1 M H 0.162 L B 0.226 I H 0.309 S H 0.229 H H 0.425 S H 0.751 D H 0.800 L H 0.817 N H 0.882 Q H 0.890 Q H 0.909 L H 0.835 K H 0.763 S H 0.765 A H 0.290 G S 0.453 I B 0.231 G B 0.243 F B 0.410 N B 0.547 A H 0.564 T H 0.724 E H 0.711 L H 0.716 H H 0.543 G H 0.484 F H 0.523 L H 0.392 S H 0.273 G H 0.189 L H 0.332 L H 0.205 C B 0.184 G S 0.208 G S 0.177 L H 0.211 K S 0.262 D H 0.356 Q H 0.479 S H 0.712 W H 0.694 L H 0.881 P H 0.918 L H 0.910 L H 0.814 Y H 0.828 Q H 0.806 F H 0.651 S H 0.357 N H 0.299 D H 0.222 N S 0.316 H S 0.165 A C 0.207 Y B 0.259 P H 0.412 T H 0.650 G H 0.599 L H 0.710 V H 0.720 Q H 0.825 P H 0.831 V H 0.871 T H 0.936 E H 0.926 L H 0.916 Y H 0.920 E H 0.925 Q H 0.907 I H 0.824 S H 0.779 Q H 0.732 T H 0.645 L H 0.501 S H 0.506 D H 0.211 V H 0.279 E B 0.182 G S 0.336 F E 0.452 T E 0.554 F E 0.534 E E 0.527 L E 0.546 G E 0.301 L B 0.434 T C 0.547 E G 0.474 D S 0.704 E B 0.306 N H 0.191 V H 0.197 F H 0.267 T H 0.344 Q H 0.462 A H 0.724 D H 0.856 S H 0.868 L H 0.896 S H 0.919 D H 0.940 W H 0.930 A H 0.886 N H 0.892 Q H 0.877 F H 0.842 L H 0.706 L H 0.639 G H 0.527 I B 0.241 G S 0.288 L H 0.262 A H 0.249 Q H 0.247 P H 0.582 E H 0.449 L H 0.359 A H 0.377 K H 0.301 E H 0.227 K H 0.224 G H 0.211 E H 0.370 I H 0.619 G H 0.703 E H 0.747 A H 0.784 V H 0.814 D H 0.878 D H 0.743 L H 0.692 Q H 0.880 D H 0.845 I H 0.788 C H 0.648 Q H 0.673 L B 0.426 G S 0.401 Y B 0.254 D E 0.301 E H 0.432 D H 0.528 D H 0.448 N H 0.231 E H 0.818 E H 0.914 E H 0.866 L H 0.903 A H 0.915 E H 0.917 A H 0.901 L H 0.935 E H 0.958 E H 0.959 I H 0.942 I H 0.944 E H 0.953 Y H 0.942 V H 0.931 R H 0.955 T H 0.942 I H 0.939 A H 0.932 M H 0.912 L H 0.885 F H 0.789 Y H 0.620 S H 0.543 H H 0.346 F B 0.230 N S 0.194 E B 0.248 G B 0.265 E B 0.363 I B 0.290 E B 0.260 S B 0.246 K B 0.349 P E 0.367 V E 0.359 L E 0.291 H E 0.321 END