PFRMAT SS
TARGET T0129
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0129.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 6
METHOD
MODEL 1
M H 0.162
L B 0.226
I H 0.309
S H 0.229
H H 0.425
S H 0.751
D H 0.800
L H 0.817
N H 0.882
Q H 0.890
Q H 0.909
L H 0.835
K H 0.763
S H 0.765
A H 0.290
G S 0.453
I B 0.231
G B 0.243
F B 0.410
N B 0.547
A H 0.564
T H 0.724
E H 0.711
L H 0.716
H H 0.543
G H 0.484
F H 0.523
L H 0.392
S H 0.273
G H 0.189
L H 0.332
L H 0.205
C B 0.184
G S 0.208
G S 0.177
L H 0.211
K S 0.262
D H 0.356
Q H 0.479
S H 0.712
W H 0.694
L H 0.881
P H 0.918
L H 0.910
L H 0.814
Y H 0.828
Q H 0.806
F H 0.651
S H 0.357
N H 0.299
D H 0.222
N S 0.316
H S 0.165
A C 0.207
Y B 0.259
P H 0.412
T H 0.650
G H 0.599
L H 0.710
V H 0.720
Q H 0.825
P H 0.831
V H 0.871
T H 0.936
E H 0.926
L H 0.916
Y H 0.920
E H 0.925
Q H 0.907
I H 0.824
S H 0.779
Q H 0.732
T H 0.645
L H 0.501
S H 0.506
D H 0.211
V H 0.279
E B 0.182
G S 0.336
F E 0.452
T E 0.554
F E 0.534
E E 0.527
L E 0.546
G E 0.301
L B 0.434
T C 0.547
E G 0.474
D S 0.704
E B 0.306
N H 0.191
V H 0.197
F H 0.267
T H 0.344
Q H 0.462
A H 0.724
D H 0.856
S H 0.868
L H 0.896
S H 0.919
D H 0.940
W H 0.930
A H 0.886
N H 0.892
Q H 0.877
F H 0.842
L H 0.706
L H 0.639
G H 0.527
I B 0.241
G S 0.288
L H 0.262
A H 0.249
Q H 0.247
P H 0.582
E H 0.449
L H 0.359
A H 0.377
K H 0.301
E H 0.227
K H 0.224
G H 0.211
E H 0.370
I H 0.619
G H 0.703
E H 0.747
A H 0.784
V H 0.814
D H 0.878
D H 0.743
L H 0.692
Q H 0.880
D H 0.845
I H 0.788
C H 0.648
Q H 0.673
L B 0.426
G S 0.401
Y B 0.254
D E 0.301
E H 0.432
D H 0.528
D H 0.448
N H 0.231
E H 0.818
E H 0.914
E H 0.866
L H 0.903
A H 0.915
E H 0.917
A H 0.901
L H 0.935
E H 0.958
E H 0.959
I H 0.942
I H 0.944
E H 0.953
Y H 0.942
V H 0.931
R H 0.955
T H 0.942
I H 0.939
A H 0.932
M H 0.912
L H 0.885
F H 0.789
Y H 0.620
S H 0.543
H H 0.346
F B 0.230
N S 0.194
E B 0.248
G B 0.265
E B 0.363
I B 0.290
E B 0.260
S B 0.246
K B 0.349
P E 0.367
V E 0.359
L E 0.291
H E 0.321
END