# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1a59 378 9.70e-01 1aj8A a.103.1.1 18902 1necA 216 1.21e+00 1vfrA d.90.1.1 40249 1a8h 500 1.57e+00 1a8h a.27.1.1 16922 c.26.1.1 31589 1brwA 433 1.97e+00 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1icrA 217 2.12e+00 1vfrA d.90.1.1 62274 1io7A 368 2.24e+00 1f4tA a.104.1.1 18971 1pbv 195 2.88e+00 1pbv a.118.3.1 19179 4xiaA 393 4.02e+00 4xis c.1.15.3 29439 1ggqA 174 4.10e+00 1ggqA a.24.12.1 60486 1zymA 258 4.15e+00 1zymA a.60.10.1 18110 c.8.1.2 30705 1f1mA 164 4.35e+00 1ggqA a.24.12.1 59598 1cll 148 4.39e+00 1cll a.39.1.5 17263 1jndA 420 4.76e+00 1e6qM 501 5.31e+00 1e70M c.1.8.4 28920 1go3F 107 5.50e+00 a.60.8.2 65407 6cts 433 5.91e+00 1csh a.103.1.1 18891 1e4mM 501 5.94e+00 1e70M c.1.8.4 59226 1e70M 501 5.95e+00 1e70M c.1.8.4 28926 1h6oA 204 6.16e+00 a.146.1.1 60689 1qlaA 656 6.32e+00 1qlaA a.7.3.1 16328 c.3.1.4 30427 d.168.1.1 42310 1ebuA 358 6.57e+00 1ebuA c.2.1.3 30035 d.81.1.2 39950 1rcd 173 6.69e+00 2fha a.25.1.1 16687 1fd9A 213 6.77e+00 1fd9A d.26.1.1 59771 5cpp 414 6.79e+00 1phd a.104.1.1 18935 1exrA 148 7.19e+00 1cll a.39.1.5 17299 1h99A 224 8.02e+00 a.142.1.1 60814 a.142.1.1 60815 1g4yR 148 8.46e+00 1cll a.39.1.5 60252 1osa 148 9.00e+00 1cll a.39.1.5 17300 3cln 148 9.05e+00 1cll a.39.1.5 17286 1ebfA 358 9.31e+00 1ebuA c.2.1.3 30033 d.81.1.2 39948 1ukz 203 9.48e+00 1zin c.37.1.1 31840 1mtyB 384 1.05e+01 1mtyB a.25.1.2 16740 1toh 343 1.09e+01 4pah d.178.1.1 42573 1eia 207 1.12e+01 1eia a.28.3.1 16951 a.73.1.1 18331 1iapA 211 1.15e+01 a.91.1.1 62119 1ljrA 244 1.15e+01 1ljrA a.45.1.1 17707 c.47.1.5 33001 1phd 414 1.19e+01 1phd a.104.1.1 18913 1qmqA 414 1.21e+01 1phd a.104.1.1 18907 1i50B 1224 1.21e+01 e.29.1.2 61755 1gjnA 153 1.23e+01 1phg 414 1.26e+01 1phd a.104.1.1 18910 1a28A 256 1.41e+01 1a28A a.123.1.1 19290 1f4tA 368 1.45e+01 1f4tA a.104.1.1 18973 1dz4A 414 1.50e+01 1phd a.104.1.1 18903 1mgn 154 1.54e+01 1a6m a.1.1.2 15097 1pbwA 216 1.56e+01 1pbwA a.116.1.1 19103 1fps 348 1.56e+01 1uby a.128.1.1 19436 2minB 522 1.57e+01 1qguB c.92.2.3 35610 1mmoB 384 1.58e+01 1mtyB a.25.1.2 16768 1phb 414 1.59e+01 1phd a.104.1.1 18906 1d9cA 121 1.61e+01 1d9cA a.26.1.3 16901 1e6iA 121 1.61e+01 1b91A a.29.2.1 16969 3minB 522 1.61e+01 1qguB c.92.2.3 35606 1ebmA 317 1.63e+01 1ebmA a.96.1.3 18751 d.129.1.2 41300 1gm5A 780 1.67e+01 a.29.4.1 65298 b.40.4.9 65299 c.37.1.13 65300 c.37.1.13 65301 1bglA 1023 1.68e+01 1bglA b.1.4.1 22097 b.1.4.1 22098 b.18.1.5 23734 b.30.1.1 24358 c.1.8.3 28857 1pda 315 1.73e+01 1pda c.94.1.1 35751 d.50.2.1 38794 1e1dA 553 1.76e+01 1e1dA e.26.1.1 43363 1ja9A 274 1.80e+01 c.2.1.2 62817 1h7cA 108 1.81e+01 1rec 201 1.83e+01 1rec a.39.1.5 17326 1hqcA 324 1.83e+01 1hqcA a.4.5.11 16127 c.37.1.13 32424 1jz8A 1023 1.84e+01 b.1.4.1 67830 b.1.4.1 67831 b.18.1.5 67832 b.30.1.1 67833 c.1.8.3 67834 1dp0A 1023 1.84e+01 b.1.4.1 22073 b.1.4.1 22074 b.18.1.5 23722 b.30.1.1 24346 c.1.8.3 28845 1ggzA 148 1.85e+01 1b78A 193 1.89e+01 1b78A c.51.4.1 33221 1ax4A 467 1.89e+01 1ax4A c.67.1.2 34391 1tpt 440 1.92e+01 1brwA a.46.2.1 17763 c.27.1.1 31627 d.41.3.1 38625 2mjpA 193 2.03e+01 1b78A c.51.4.1 33223 1g7dA 106 2.07e+01 1g7dA a.71.1.1 18318 1dwtA 153 2.08e+01 1a6m a.1.1.2 15190 1liaA 164 2.10e+01 1cpcA a.1.1.3 15661 2eiaB 206 2.16e+01 1eia a.28.3.1 16950 a.73.1.1 18330 1exnA 290 2.29e+01 1exnA a.60.7.1 18088 c.53.1.2 33358 1hjp 203 2.39e+01 1hjp a.5.1.1 16274 a.60.2.1 17947 b.40.4.2 25266 1jt6A 188 2.40e+01 a.4.1.9 67247 a.121.1.1 67248 1lox 662 2.42e+01 1lox a.119.1.2 19238 b.12.1.1 23638 1qt9A 98 2.47e+01 1awd d.15.4.1 37647 1czpA 98 2.47e+01 1awd d.15.4.1 37645 3adk 195 2.51e+01 1zin c.37.1.1 31885 1emvA 86 2.52e+01 1cei a.28.2.1 16944 1e2uA 553 2.53e+01 1e1dA e.26.1.1 43362 1gntA 553 2.53e+01 1b6g 310 2.59e+01 1b6g c.69.1.8 34661 1f3iA 481 2.59e+01 1b7eA c.55.3.4 33679 1csh 435 2.60e+01 1csh a.103.1.1 18880 1ede 310 2.64e+01 1b6g c.69.1.8 34662 1b04A 318 2.74e+01 1b04A d.142.2.2 41579 2ezh 75 2.77e+01 2ezh a.4.1.2 16029 1cmnA 402 2.82e+01 1rom a.104.1.1 18958 1qhlA 227 2.93e+01 1qhlA c.37.1.12 32382 1cbg 490 2.95e+01 1e70M c.1.8.4 28933 1fe0A 68 2.95e+01 1cc8A d.58.17.1 39345 1i3dA 146 2.97e+01 a.1.1.2 61587 1jlnA 297 3.03e+01 1pty c.45.1.2 63172 1uby 367 3.03e+01 1uby a.128.1.1 19435 1ab4 477 3.07e+01 1ab4 e.11.1.1 43251 1a6s 87 3.10e+01 1a6s a.61.1.4 18134 2ezi 75 3.12e+01 2ezh a.4.1.2 16028 1b8aA 438 3.18e+01 1b8aA b.40.4.1 25244 d.104.1.1 40765 1a5t 334 3.18e+01 1a5t a.80.1.1 18450 c.37.1.13 32423 1jfbA 404 3.22e+01 a.104.1.1 66624 1lre 81 3.23e+01 1lre a.13.1.1 16376 1dcnD 436 3.23e+01 1auwA a.127.1.1 19423 1f8xA 157 3.26e+01 1f8xA c.23.14.1 31397 2spo 154 3.26e+01 1a6m a.1.1.2 15053 1h70A 255 3.27e+01 1h70A d.126.1.3 60711 1j9bA 141 3.27e+01 c.47.1.12 66459 1be3F 110 3.31e+01 1be3F f.2.1.8 43668 1e4iA 447 3.37e+01 1e70M c.1.8.4 59225 2mhr 118 3.39e+01 2mhr a.24.4.1 16581 1ycsB 239 3.39e+01 1ycsB a.118.2.1 19155 b.34.2.1 24553 1j78A 458 3.45e+01 a.126.1.1 66397 a.126.1.1 66398 a.126.1.1 66399 1hm6A 346 3.51e+01 1avc a.65.1.1 18147 1ja1A 622 3.56e+01 1amoA b.43.4.1 62803 c.23.5.2 62804 c.25.1.4 62805 1ktpA 162 3.57e+01 1kktA 511 3.60e+01 a.102.2.1 68687 351c 82 3.63e+01 451c a.3.1.1 15905 451c 82 3.63e+01 451c a.3.1.1 15904 1af7 274 3.64e+01 1af7 a.58.1.1 17928 c.66.1.8 34203 1jb0L 154 3.68e+01 1jb0L f.2.1.12 62829 1fkmA 396 3.72e+01 1fkmA a.69.2.1 18315 a.69.2.1 18316 1aipE 405 3.73e+01 1efcA b.43.3.1 25699 b.44.1.1 25739 c.37.1.8 32134 1j6wA 175 3.73e+01 1j98A d.185.1.2 62663 1kxpD 458 3.74e+01 1kxu 333 3.74e+01 1jkw a.74.1.1 18358 a.74.1.1 18359 1e58A 249 3.78e+01 1qhfA c.60.1.1 59262 1rom 403 3.81e+01 1rom a.104.1.1 18963 1f24A 402 3.82e+01 1rom a.104.1.1 18953 1f1sA 814 3.84e+01 a.102.3.2 64928 b.1.1.5 64929 b.24.1.1 64930 b.30.3.1 64931 9gafA 295 3.90e+01 1apyA d.153.1.5 42008 1k7wA 468 3.91e+01 1qcrF 103 3.93e+01 1be3F f.2.1.8 43676 1jtyA 194 3.97e+01 a.4.1.9 67292 a.121.1.1 67293