From mailer@bialko.llnl.gov  Thu Aug 15 06:36:19 2002
Date: Thu, 15 Aug 2002 06:36:13 -0700 (PDT)
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# 
# Protein Structure Prediction Center, LLNL, Livermore, CA
# Verification system Thu Aug 15 06:08:14 PDT 2002 by Adam Zemla
# 
# The PIN number of your submission is: PIN_210222_24557
# (PIN number is not an ACCESSION CODE)
# 

Thank you for your submission.
Your prediction has been accepted with an ACCESSION CODE:

T0181SS389_1 
 
Current information on models submitted in prediction  T0181SS389
 MODEL_INDEX      PIN               CODE             DATE           E-mail
T0181SS389_1  PIN_210222_24557 1549-8716-6404  08/15/02 06:08:14 casp5@bialko.llnl.gov
 
PLEASE NOTE: Submission of a duplicate prediction (same target, format, 
       model index) will REPLACE an existing submission (ACCESSION CODE), 
       provided it is received before the target has expired. 
 
The current status of models accepted for target  T0181
 MODEL_INDEX      PIN               CODE             DATE           E-mail
T0181SS389_1  PIN_210222_24557 1549-8716-6404  08/15/02 06:08:14 casp5@bialko.llnl.gov 


For more information on accepted models submitted to CASP5 see: 
http://PredictionCenter.llnl.gov/casp5/models/casp5-models.html

Please check below if the verified data 
of your submission is correct.

# Reading prediction format SS

PFRMAT SS
TARGET T0181
AUTHOR 1549-8716-6404

# Reading MODEL  1

# Reading prediction format SS             (DONE)

# Checking the SS prediction MODEL  1
# Checking the SS prediction MODEL  1      (DONE)

# MODEL index: 1 

# Total number of residues in model:           111 
# Number of residues with nonzero confidence:  111 
# Number of METHOD records:                     65 

# No errors.


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PFRMAT SS
TARGET T0181
AUTHOR 1549-8716-6404
METHOD CAFASP
METHOD samt02_dssp_ehl
METHOD This file is the result of combining several RDB files, specifically
METHOD T0181.t2k.dssp-ebghstl.rdb  (weight 1.53986)
METHOD T0181.t2k.stride-ebghtl.rdb  (weight 1.24869)
METHOD T0181.t2k.str.rdb  (weight 1.53983)
METHOD These files were combined by translating their predictions into EHL
METHOD predictions with tables generated by compare-real, and then combining
METHOD those predictions with weights proportional to their mutual information
METHOD with the EHL alphabet.  The comments from the individual files follow.
METHOD
METHOD Comments from T0181.t2k.dssp-ebghstl.rdb
METHOD ============================================
METHOD TARGET T0181
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD window units
METHOD     5    15
METHOD     7    15
METHOD     9    15
METHOD    13     7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0181.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 2
METHOD
METHOD ============================================
METHOD Comments from T0181.t2k.stride-ebghtl.rdb
METHOD ============================================
METHOD TARGET T0181
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD window units
METHOD     5    15
METHOD     7    15
METHOD     9    15
METHOD    13     6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0181.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 2
METHOD
METHOD ============================================
METHOD Comments from T0181.t2k.str.rdb
METHOD ============================================
METHOD TARGET T0181
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net
METHOD This is a 4-layer network, with 
METHOD window units
METHOD     5    15
METHOD     7    15
METHOD     9    15
METHOD    13    13 (1 str )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0181.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 2
METHOD
METHOD ============================================
MODEL 1
M C 0.96
S C 0.82
T C 0.71
V C 0.57
T E 0.56
K E 0.73
Y E 0.80
F E 0.81
Y E 0.74
K C 0.51
G C 0.77
E C 0.86
N C 0.84
T C 0.63
D E 0.66
L E 0.94
I E 0.96
V E 0.95
F E 0.92
A E 0.69
A C 0.71
S C 0.89
E C 0.76
E H 0.52
L H 0.65
V H 0.77
D H 0.80
E H 0.78
Y H 0.72
L H 0.54
K C 0.59
N C 0.90
P C 0.82
S C 0.78
I C 0.67
G C 0.67
K C 0.52
L H 0.71
S H 0.77
E H 0.70
V H 0.64
V H 0.46
E E 0.45
L E 0.51
F E 0.70
E E 0.80
V E 0.82
F E 0.80
T E 0.57
P C 0.70
Q C 0.86
D C 0.90
G C 0.90
R C 0.84
G C 0.86
A C 0.81
E C 0.67
G C 0.59
E C 0.47
L H 0.36
G H 0.38
A H 0.45
A H 0.49
S H 0.49
K H 0.85
A H 0.86
Q H 0.88
V H 0.87
E H 0.85
N H 0.79
E H 0.68
F C 0.49
G C 0.76
K C 0.75
G C 0.66
K C 0.53
K H 0.46
I H 0.83
E H 0.91
E H 0.93
V H 0.94
I H 0.96
D H 0.96
L H 0.96
I H 0.96
L H 0.94
R H 0.82
N C 0.61
G C 0.93
K C 0.91
P C 0.84
N C 0.86
S C 0.80
T C 0.71
T C 0.58
S C 0.54
S C 0.49
L C 0.42
K C 0.44
T C 0.55
K C 0.74
G C 0.83
G C 0.83
N C 0.75
A C 0.68
G C 0.67
T C 0.58
K C 0.51
A C 0.55
Y C 0.75
N C 0.98
END
END




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