From mailer@bialko.llnl.gov Tue May 28 17:59:08 2002 Date: Tue, 28 May 2002 17:59:02 -0700 (PDT) From: Automatic Reply To: karplus@soe.ucsc.edu Subject: T0129 AL samt99 1 X-SpamBouncer: 1.4 (10/07/01) X-SBPass: NoBounce X-SBClass: OK # # Protein Structure Prediction Center, LLNL, Livermore, CA # Verification system Tue May 28 17:32:49 PDT 2002 by Adam Zemla # # The PIN number of your submission is: PIN_435915_10045 # (PIN number is not an ACCESSION CODE) # Thank you for your submission. Your prediction has been accepted with an ACCESSION CODE: T0129AL007_1 Current information on models submitted in prediction T0129AL007 MODEL_INDEX PIN CODE DATE E-mail T0129AL007_1 PIN_435915_10045 6269-7633-6117 05/28/02 17:32:49 casp5@bialko.llnl.gov PLEASE NOTE: Submission of a duplicate prediction (same target, format, model index) will REPLACE an existing submission (ACCESSION CODE), provided it is received before the target has expired. The current status of models accepted for target T0129 MODEL_INDEX PIN CODE DATE E-mail T0129AL007_1 PIN_435915_10045 6269-7633-6117 05/28/02 17:32:49 casp5@bialko.llnl.gov For more information on accepted models submitted to CASP5 see: http://PredictionCenter.llnl.gov/casp5/models/casp5-models.html Please check below if the verified data of your submission is correct. # Reading prediction format AL PFRMAT AL TARGET T0129 AUTHOR 6269-7633-6117 # Reading MODEL 1 PARENT 1ekbB # Reading prediction format AL (DONE) # Converting alignments into a 3D structure # Loading structure PDB: 1ekb (chain: B) # Converting alignments into a 3D structure (DONE) # Checking the AL prediction MODEL 1 # Checking the AL prediction MODEL 1 (DONE) # MODEL index: 1 # Target name: T0129 # Total number of residues in target: 182 # Total number of residues in model: 35 # Total number of atoms in model: 140 # Number of fragments in model: 1 # Number of METHOD records: 1 # No errors. ################################ # # # SUBMISSION # # # ################################ # # # BEGIN # # # ################################ PFRMAT AL TARGET T0129 AUTHOR 6269-7633-6117 METHOD CAFASP MODEL 1 PARENT 1ekbB T 73 L 208 L 74 L 209 S 75 A 210 D 76 G 211 V 77 V 212 E 78 T 213 G 79 S 214 F 80 F 215 T 81 G 216 F 82 Y 217 E 83 Q 219 L 84 C 220 G 85 A 221 L 86 L 221A T 87 P 222 E 88 N 223 D 89 R 224 E 90 P 225 N 91 G 226 V 92 V 227 F 93 Y 228 T 94 A 229 Q 95 R 230 A 96 V 231 D 97 P 232 S 98 R 233 L 99 F 234 S 100 T 235 D 101 E 236 W 102 W 237 A 103 I 238 N 104 Q 239 Q 105 S 240 F 106 F 241 L 107 L 242 TER END ################################ # # # END # # # ################################ From mailer@bialko.llnl.gov Tue May 28 17:59:18 2002 Date: Tue, 28 May 2002 17:59:12 -0700 (PDT) From: Automatic Reply To: karplus@soe.ucsc.edu Subject: T0129 AL samt99 2 X-SpamBouncer: 1.4 (10/07/01) X-SBPass: NoBounce X-SBClass: OK # # Protein Structure Prediction Center, LLNL, Livermore, CA # Verification system Tue May 28 17:33:02 PDT 2002 by Adam Zemla # # The PIN number of your submission is: PIN_442038_10046 # (PIN number is not an ACCESSION CODE) # Thank you for your submission. Your prediction has been accepted with an ACCESSION CODE: T0129AL007_2 Current information on models submitted in prediction T0129AL007 MODEL_INDEX PIN CODE DATE E-mail T0129AL007_2 PIN_442038_10046 6269-7633-6117 05/28/02 17:33:02 casp5@bialko.llnl.gov T0129AL007_1 PIN_435915_10045 6269-7633-6117 05/28/02 17:32:49 casp5@bialko.llnl.gov PLEASE NOTE: Submission of a duplicate prediction (same target, format, model index) will REPLACE an existing submission (ACCESSION CODE), provided it is received before the target has expired. The current status of models accepted for target T0129 MODEL_INDEX PIN CODE DATE E-mail T0129AL007_1 PIN_435915_10045 6269-7633-6117 05/28/02 17:32:49 casp5@bialko.llnl.gov T0129AL007_2 PIN_442038_10046 6269-7633-6117 05/28/02 17:33:02 casp5@bialko.llnl.gov For more information on accepted models submitted to CASP5 see: http://PredictionCenter.llnl.gov/casp5/models/casp5-models.html Please check below if the verified data of your submission is correct. # Reading prediction format AL PFRMAT AL TARGET T0129 AUTHOR 6269-7633-6117 # Reading MODEL 2 PARENT 1e79A # Reading prediction format AL (DONE) # Converting alignments into a 3D structure # Loading structure PDB: 1e79 (chain: A) # Converting alignments into a 3D structure (DONE) # Checking the AL prediction MODEL 2 # Checking the AL prediction MODEL 2 (DONE) # MODEL index: 2 # Target name: T0129 # Total number of residues in target: 182 # Total number of residues in model: 105 # Total number of atoms in model: 420 # Number of fragments in model: 1 # Number of METHOD records: 1 # No errors. ################################ # # # SUBMISSION # # # ################################ # # # BEGIN # # # ################################ PFRMAT AL TARGET T0129 AUTHOR 6269-7633-6117 METHOD CAFASP MODEL 2 PARENT 1e79A N 52 R 291 H 53 E 292 A 54 A 293 Y 55 Y 294 P 56 P 295 T 57 G 296 G 58 D 297 L 59 V 298 V 60 F 299 Q 61 Y 300 P 62 L 301 V 63 H 302 T 64 S 303 E 65 R 304 L 66 L 305 Y 67 L 306 E 68 E 307 Q 69 R 308 I 70 A 309 S 71 A 310 Q 72 K 311 T 73 M 312 L 74 N 313 G 79 D 314 F 80 A 315 T 81 F 316 F 82 G 317 E 83 G 318 L 84 G 319 G 85 S 320 L 86 L 321 T 87 T 322 E 88 A 323 D 89 L 324 E 90 P 325 N 91 V 326 V 92 I 327 F 93 E 328 T 94 T 329 Q 95 Q 330 A 96 A 331 D 97 G 332 S 98 D 333 L 99 V 334 S 100 S 335 D 101 A 336 W 102 Y 337 A 103 I 338 N 104 P 339 Q 105 T 340 F 106 N 341 L 107 V 342 L 108 I 343 G 109 S 344 I 110 I 345 G 111 T 346 L 112 D 347 A 113 G 348 Q 114 Q 349 P 115 I 350 E 116 F 351 L 117 L 352 A 118 E 353 K 119 T 354 E 120 E 355 K 121 L 356 G 122 F 357 E 123 Y 358 I 124 K 359 G 125 G 360 E 126 A 395 A 127 Q 396 V 128 Y 397 D 129 R 398 D 130 E 399 L 131 V 400 Q 132 A 401 D 133 A 402 I 134 F 403 C 135 A 404 Q 136 Q 405 L 137 F 406 G 138 G 407 Y 139 S 408 D 140 D 409 E 141 L 410 D 142 D 411 D 143 A 412 N 144 A 413 E 145 T 414 E 146 Q 415 E 147 Q 416 L 148 L 417 A 149 L 418 E 150 S 419 A 151 R 420 L 152 G 421 E 153 V 422 E 154 R 423 I 155 L 424 I 156 T 425 E 157 E 426 Y 158 L 427 V 159 L 428 R 160 K 429 TER END ################################ # # # END # # # ################################ From mailer@bialko.llnl.gov Tue May 28 18:00:09 2002 Date: Tue, 28 May 2002 18:00:03 -0700 (PDT) From: Automatic Reply To: karplus@soe.ucsc.edu Subject: T0129 AL samt99 3 X-SpamBouncer: 1.4 (10/07/01) X-SBPass: NoBounce X-SBClass: OK # # Protein Structure Prediction Center, LLNL, Livermore, CA # Verification system Tue May 28 17:33:48 PDT 2002 by Adam Zemla # # The PIN number of your submission is: PIN_446619_10049 # (PIN number is not an ACCESSION CODE) # Thank you for your submission. Your prediction has been accepted with an ACCESSION CODE: T0129AL007_3 Current information on models submitted in prediction T0129AL007 MODEL_INDEX PIN CODE DATE E-mail T0129AL007_3 PIN_446619_10049 6269-7633-6117 05/28/02 17:33:48 casp5@bialko.llnl.gov T0129AL007_2 PIN_442038_10046 6269-7633-6117 05/28/02 17:33:02 casp5@bialko.llnl.gov T0129AL007_1 PIN_435915_10045 6269-7633-6117 05/28/02 17:32:49 casp5@bialko.llnl.gov PLEASE NOTE: Submission of a duplicate prediction (same target, format, model index) will REPLACE an existing submission (ACCESSION CODE), provided it is received before the target has expired. The current status of models accepted for target T0129 MODEL_INDEX PIN CODE DATE E-mail T0129AL007_1 PIN_435915_10045 6269-7633-6117 05/28/02 17:32:49 casp5@bialko.llnl.gov T0129AL007_2 PIN_442038_10046 6269-7633-6117 05/28/02 17:33:02 casp5@bialko.llnl.gov T0129AL007_3 PIN_446619_10049 6269-7633-6117 05/28/02 17:33:48 casp5@bialko.llnl.gov For more information on accepted models submitted to CASP5 see: http://PredictionCenter.llnl.gov/casp5/models/casp5-models.html Please check below if the verified data of your submission is correct. # Reading prediction format AL PFRMAT AL TARGET T0129 AUTHOR 6269-7633-6117 # Reading MODEL 3 PARENT 1bmfA # Reading prediction format AL (DONE) # Converting alignments into a 3D structure # Loading structure PDB: 1bmf (chain: A) # Converting alignments into a 3D structure (DONE) # Checking the AL prediction MODEL 3 # Checking the AL prediction MODEL 3 (DONE) # MODEL index: 3 # Target name: T0129 # Total number of residues in target: 182 # Total number of residues in model: 103 # Total number of atoms in model: 412 # Number of fragments in model: 1 # Number of METHOD records: 1 # No errors. ################################ # # # SUBMISSION # # # ################################ # # # BEGIN # # # ################################ PFRMAT AL TARGET T0129 AUTHOR 6269-7633-6117 METHOD CAFASP MODEL 3 PARENT 1bmfA A 54 A 293 Y 55 Y 294 P 56 P 295 T 57 G 296 G 58 D 297 L 59 V 298 V 60 F 299 Q 61 Y 300 P 62 L 301 V 63 H 302 T 64 S 303 E 65 R 304 L 66 L 305 Y 67 L 306 E 68 E 307 Q 69 R 308 I 70 A 309 S 71 A 310 Q 72 K 311 T 73 M 312 L 74 N 313 S 75 D 314 D 76 A 315 V 77 F 316 E 78 G 317 G 79 G 318 L 84 G 319 G 85 S 320 L 86 L 321 T 87 T 322 E 88 A 323 D 89 L 324 E 90 P 325 N 91 V 326 V 92 I 327 F 93 E 328 T 94 T 329 Q 95 Q 330 A 96 A 331 D 97 G 332 S 98 D 333 L 99 V 334 S 100 S 335 D 101 A 336 W 102 Y 337 A 103 I 338 N 104 P 339 Q 105 T 340 F 106 N 341 L 107 V 342 L 108 I 343 G 109 S 344 I 110 I 345 G 111 T 346 L 112 D 347 A 113 G 348 Q 114 Q 349 P 115 I 350 E 116 F 351 L 117 L 352 A 118 E 353 K 119 T 354 E 120 E 355 K 121 L 356 G 122 F 357 E 123 Y 358 I 124 K 359 G 125 G 360 E 126 A 395 A 127 Q 396 V 128 Y 397 D 129 R 398 D 130 E 399 L 131 V 400 Q 132 A 401 D 133 A 402 I 134 F 403 C 135 A 404 Q 136 Q 405 L 137 F 406 G 138 G 407 Y 139 S 408 D 140 D 409 E 141 L 410 D 142 D 411 D 143 A 412 N 144 A 413 E 145 T 414 E 146 Q 415 E 147 Q 416 L 148 L 417 A 149 L 418 E 150 S 419 A 151 R 420 L 152 G 421 E 153 V 422 E 154 R 423 I 155 L 424 I 156 T 425 E 157 E 426 Y 158 L 427 V 159 L 428 R 160 K 429 TER END ################################ # # # END # # # ################################ From mailer@bialko.llnl.gov Tue May 28 18:00:19 2002 Date: Tue, 28 May 2002 18:00:13 -0700 (PDT) From: Automatic Reply To: karplus@soe.ucsc.edu Subject: T0129 AL samt99 4 X-SpamBouncer: 1.4 (10/07/01) X-SBPass: NoBounce X-SBClass: OK # # Protein Structure Prediction Center, LLNL, Livermore, CA # Verification system Tue May 28 17:34:02 PDT 2002 by Adam Zemla # # The PIN number of your submission is: PIN_451089_10050 # (PIN number is not an ACCESSION CODE) # Thank you for your submission. Your prediction has been accepted with an ACCESSION CODE: T0129AL007_4 Current information on models submitted in prediction T0129AL007 MODEL_INDEX PIN CODE DATE E-mail T0129AL007_4 PIN_451089_10050 6269-7633-6117 05/28/02 17:34:02 casp5@bialko.llnl.gov T0129AL007_3 PIN_446619_10049 6269-7633-6117 05/28/02 17:33:48 casp5@bialko.llnl.gov T0129AL007_2 PIN_442038_10046 6269-7633-6117 05/28/02 17:33:02 casp5@bialko.llnl.gov T0129AL007_1 PIN_435915_10045 6269-7633-6117 05/28/02 17:32:49 casp5@bialko.llnl.gov PLEASE NOTE: Submission of a duplicate prediction (same target, format, model index) will REPLACE an existing submission (ACCESSION CODE), provided it is received before the target has expired. The current status of models accepted for target T0129 MODEL_INDEX PIN CODE DATE E-mail T0129AL007_1 PIN_435915_10045 6269-7633-6117 05/28/02 17:32:49 casp5@bialko.llnl.gov T0129AL007_2 PIN_442038_10046 6269-7633-6117 05/28/02 17:33:02 casp5@bialko.llnl.gov T0129AL007_3 PIN_446619_10049 6269-7633-6117 05/28/02 17:33:48 casp5@bialko.llnl.gov T0129AL007_4 PIN_451089_10050 6269-7633-6117 05/28/02 17:34:02 casp5@bialko.llnl.gov For more information on accepted models submitted to CASP5 see: http://PredictionCenter.llnl.gov/casp5/models/casp5-models.html Please check below if the verified data of your submission is correct. # Reading prediction format AL PFRMAT AL TARGET T0129 AUTHOR 6269-7633-6117 # Reading MODEL 4 PARENT 1fnd # Reading prediction format AL (DONE) # Converting alignments into a 3D structure # Loading structure PDB: 1fnd (chain: ) # Converting alignments into a 3D structure (DONE) # Checking the AL prediction MODEL 4 # Checking the AL prediction MODEL 4 (DONE) # MODEL index: 4 # Target name: T0129 # Total number of residues in target: 182 # Total number of residues in model: 24 # Total number of atoms in model: 96 # Number of fragments in model: 1 # Number of METHOD records: 1 # No errors. ################################ # # # SUBMISSION # # # ################################ # # # BEGIN # # # ################################ PFRMAT AL TARGET T0129 AUTHOR 6269-7633-6117 METHOD CAFASP MODEL 4 PARENT 1fnd G 26 G 130 F 27 V 131 L 28 C 132 S 29 S 133 G 30 N 134 L 31 F 135 L 32 L 136 C 33 C 137 G 34 D 138 L 36 L 139 K 37 K 140 D 38 P 141 Q 39 G 142 S 40 A 143 W 41 E 144 L 42 V 145 P 43 K 146 L 44 L 147 L 45 T 148 Y 46 G 149 Q 47 P 150 F 48 V 151 S 49 G 152 N 50 K 153 TER END ################################ # # # END # # # ################################ From mailer@bialko.llnl.gov Tue May 28 18:00:29 2002 Date: Tue, 28 May 2002 18:00:23 -0700 (PDT) From: Automatic Reply To: karplus@soe.ucsc.edu Subject: T0129 AL samt99 5 X-SpamBouncer: 1.4 (10/07/01) X-SBPass: NoBounce X-SBClass: OK # # Protein Structure Prediction Center, LLNL, Livermore, CA # Verification system Tue May 28 17:34:17 PDT 2002 by Adam Zemla # # The PIN number of your submission is: PIN_454224_10051 # (PIN number is not an ACCESSION CODE) # Thank you for your submission. Your prediction has been accepted with an ACCESSION CODE: T0129AL007_5 Current information on models submitted in prediction T0129AL007 MODEL_INDEX PIN CODE DATE E-mail T0129AL007_5 PIN_454224_10051 6269-7633-6117 05/28/02 17:34:17 casp5@bialko.llnl.gov T0129AL007_4 PIN_451089_10050 6269-7633-6117 05/28/02 17:34:02 casp5@bialko.llnl.gov T0129AL007_3 PIN_446619_10049 6269-7633-6117 05/28/02 17:33:48 casp5@bialko.llnl.gov T0129AL007_2 PIN_442038_10046 6269-7633-6117 05/28/02 17:33:02 casp5@bialko.llnl.gov T0129AL007_1 PIN_435915_10045 6269-7633-6117 05/28/02 17:32:49 casp5@bialko.llnl.gov PLEASE NOTE: Submission of a duplicate prediction (same target, format, model index) will REPLACE an existing submission (ACCESSION CODE), provided it is received before the target has expired. The current status of models accepted for target T0129 MODEL_INDEX PIN CODE DATE E-mail T0129AL007_1 PIN_435915_10045 6269-7633-6117 05/28/02 17:32:49 casp5@bialko.llnl.gov T0129AL007_2 PIN_442038_10046 6269-7633-6117 05/28/02 17:33:02 casp5@bialko.llnl.gov T0129AL007_3 PIN_446619_10049 6269-7633-6117 05/28/02 17:33:48 casp5@bialko.llnl.gov T0129AL007_4 PIN_451089_10050 6269-7633-6117 05/28/02 17:34:02 casp5@bialko.llnl.gov T0129AL007_5 PIN_454224_10051 6269-7633-6117 05/28/02 17:34:17 casp5@bialko.llnl.gov For more information on accepted models submitted to CASP5 see: http://PredictionCenter.llnl.gov/casp5/models/casp5-models.html Please check below if the verified data of your submission is correct. # Reading prediction format AL PFRMAT AL TARGET T0129 AUTHOR 6269-7633-6117 # Reading MODEL 5 PARENT 1fnc # Reading prediction format AL (DONE) # Converting alignments into a 3D structure # Loading structure PDB: 1fnc (chain: ) # Converting alignments into a 3D structure (DONE) # Checking the AL prediction MODEL 5 # Checking the AL prediction MODEL 5 (DONE) # MODEL index: 5 # Target name: T0129 # Total number of residues in target: 182 # Total number of residues in model: 168 # Total number of atoms in model: 672 # Number of fragments in model: 1 # Number of METHOD records: 1 # No errors. ################################ # # # SUBMISSION # # # ################################ # # # BEGIN # # # ################################ PFRMAT AL TARGET T0129 AUTHOR 6269-7633-6117 METHOD CAFASP MODEL 5 PARENT 1fnc M 1 G 55 L 2 E 56 I 3 T 57 S 4 W 58 H 5 H 59 S 6 M 60 D 7 V 61 L 8 F 62 N 9 S 63 Q 10 H 64 Q 11 E 65 L 12 A 108 K 13 K 109 S 14 S 110 A 15 V 111 G 16 S 112 I 17 L 113 G 18 C 114 F 19 V 115 N 20 K 116 A 21 R 117 T 22 L 118 E 23 I 119 L 24 I 128 H 25 K 129 G 26 G 130 F 27 V 131 L 28 C 132 S 29 S 133 G 30 N 134 L 31 F 135 L 32 L 136 C 33 C 137 G 34 D 138 L 36 L 139 K 37 K 140 D 38 P 141 Q 39 G 142 S 40 A 143 W 41 E 144 L 42 V 145 P 43 K 146 L 44 L 147 L 45 T 148 Y 46 G 149 Q 47 E 154 F 48 M 155 S 49 L 156 N 50 M 157 D 51 P 158 N 52 K 159 H 53 D 160 A 54 N 162 Y 55 A 163 P 56 T 164 T 57 I 165 G 58 I 166 L 59 M 167 V 60 L 168 Q 61 G 169 P 62 T 170 V 63 I 174 T 64 A 175 E 65 P 176 L 66 F 177 Y 67 R 178 E 68 S 179 Q 69 F 180 I 70 L 181 S 71 W 182 Q 72 K 183 T 73 M 184 L 74 F 185 S 75 Y 192 D 76 K 193 V 77 F 194 E 78 N 195 G 79 G 196 F 80 L 197 T 81 A 198 F 82 W 199 E 83 L 200 L 84 F 201 G 85 L 202 L 86 G 203 T 87 V 204 E 88 P 205 D 89 T 206 E 90 S 207 N 91 S 208 V 92 S 209 F 93 L 210 T 94 L 211 Q 95 Y 212 A 96 K 213 D 97 E 214 S 98 E 215 L 99 F 216 S 100 E 217 D 101 K 218 W 102 M 219 A 103 K 220 N 104 E 221 Q 105 R 228 F 106 L 229 L 107 D 230 L 108 F 231 G 109 A 232 I 110 V 233 G 111 S 234 L 112 R 235 A 113 E 236 Q 114 Q 237 P 115 T 238 E 116 N 239 L 117 E 240 A 118 K 241 K 119 G 242 E 120 E 243 K 121 K 244 G 122 M 245 E 123 Y 246 I 124 I 247 G 125 Q 248 E 126 T 249 A 127 R 250 V 128 M 251 D 129 A 252 D 130 Q 253 L 131 Y 254 Q 132 A 255 D 133 V 256 I 134 E 257 C 135 L 258 Q 136 W 259 L 137 E 260 G 138 M 261 Y 139 L 262 D 140 K 263 E 141 K 264 D 142 D 265 D 143 N 266 N 144 T 267 E 145 E 278 E 146 K 279 E 147 G 280 L 148 I 281 A 149 D 282 E 150 D 283 A 151 I 284 L 152 M 285 E 153 V 286 E 154 S 287 I 155 L 288 I 156 A 289 E 157 A 290 V 159 L 303 R 160 K 304 T 161 K 305 I 162 A 306 A 163 E 307 M 164 Q 308 L 165 W 309 F 166 N 310 Y 167 V 311 S 168 E 312 H 169 V 313 F 170 Y 314 TER END ################################ # # # END # # # ################################ From mailer@bialko.llnl.gov Tue Jun 4 12:01:43 2002 Date: Tue, 4 Jun 2002 12:01:33 -0700 (PDT) From: Automatic Reply To: karplus@soe.ucsc.edu Subject: T0129 TS samt99.pdb 1 X-SpamBouncer: 1.4 (10/07/01) X-SBPass: NoBounce X-SBClass: OK # # Protein Structure Prediction Center, LLNL, Livermore, CA # Verification system Tue Jun 4 11:35:30 PDT 2002 by Adam Zemla # # The PIN number of your submission is: PIN_466196_10280 # (PIN number is not an ACCESSION CODE) # Thank you for your submission. Your prediction has been accepted with an ACCESSION CODE: T0129TS007_1 Current information on models submitted in prediction T0129TS007 MODEL_INDEX PIN CODE DATE E-mail T0129TS007_1 PIN_466196_10280 6269-7633-6117 06/04/02 11:35:30 casp5@bialko.llnl.gov PLEASE NOTE: Submission of a duplicate prediction (same target, format, model index) will REPLACE an existing submission (ACCESSION CODE), provided it is received before the target has expired. The current status of models accepted for target T0129 MODEL_INDEX PIN CODE DATE E-mail T0129TS007_1 PIN_466196_10280 6269-7633-6117 06/04/02 11:35:30 casp5@bialko.llnl.gov T0129AL007_2 PIN_442038_10046 6269-7633-6117 05/28/02 17:33:02 casp5@bialko.llnl.gov T0129AL007_3 PIN_446619_10049 6269-7633-6117 05/28/02 17:33:48 casp5@bialko.llnl.gov T0129AL007_4 PIN_451089_10050 6269-7633-6117 05/28/02 17:34:02 casp5@bialko.llnl.gov T0129AL007_5 PIN_454224_10051 6269-7633-6117 05/28/02 17:34:17 casp5@bialko.llnl.gov For more information on accepted models submitted to CASP5 see: http://PredictionCenter.llnl.gov/casp5/models/casp5-models.html Please check below if the verified data of your submission is correct. # Reading prediction format TS PFRMAT TS TARGET T0129 AUTHOR 6269-7633-6117 # Reading MODEL 1 PARENT 1EKB_B # Loading PARENT structure: 1ekb (chain: B) # Number of residues in PARENT structure: 223 # Reading prediction format TS (DONE) # Checking the TS prediction MODEL 1 # IMPORTANT NOTE! Not complete main chain atoms for residue T 73 # !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! # # It is requested that coordinate data be supplied for at least # # all non-hydrogen main chain atoms, i.e. the N, CA, C and O # # atoms of every residue. Specifically, if only CA atoms are # # predicted by the method, predictors are encouraged to build # # the main chain atoms for every residue before submission to # # CASP. If only CA atoms were submitted it would not be possible # # to run most of the analysis software, which would severely # # limit the evaluation of that prediction. # # !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! # # IMPORTANT NOTE! Not complete main chain atoms for residue L 74 # IMPORTANT NOTE! Not complete main chain atoms for residue S 75 # IMPORTANT NOTE! Not complete main chain atoms for residue D 76 # IMPORTANT NOTE! Not complete main chain atoms for residue V 77 # IMPORTANT NOTE! Not complete main chain atoms for residue E 78 # IMPORTANT NOTE! Not complete main chain atoms for residue G 79 # IMPORTANT NOTE! Not complete main chain atoms for residue F 80 # IMPORTANT NOTE! Not complete main chain atoms for residue T 81 # IMPORTANT NOTE! Not complete main chain atoms for residue F 82 # IMPORTANT NOTE! Not complete main chain atoms for residue E 83 # IMPORTANT NOTE! Not complete main chain atoms for residue L 84 # IMPORTANT NOTE! Not complete main chain atoms for residue G 85 # IMPORTANT NOTE! Not complete main chain atoms for residue L 86 # IMPORTANT NOTE! Not complete main chain atoms for residue T 87 # IMPORTANT NOTE! Not complete main chain atoms for residue E 88 # IMPORTANT NOTE! Not complete main chain atoms for residue D 89 # IMPORTANT NOTE! Not complete main chain atoms for residue E 90 # IMPORTANT NOTE! Not complete main chain atoms for residue N 91 # IMPORTANT NOTE! Not complete main chain atoms for residue V 92 # IMPORTANT NOTE! Not complete main chain atoms for residue F 93 # IMPORTANT NOTE! Not complete main chain atoms for residue T 94 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 95 # IMPORTANT NOTE! Not complete main chain atoms for residue A 96 # IMPORTANT NOTE! Not complete main chain atoms for residue D 97 # IMPORTANT NOTE! Not complete main chain atoms for residue S 98 # IMPORTANT NOTE! Not complete main chain atoms for residue L 99 # IMPORTANT NOTE! Not complete main chain atoms for residue S 100 # IMPORTANT NOTE! Not complete main chain atoms for residue D 101 # IMPORTANT NOTE! Not complete main chain atoms for residue W 102 # IMPORTANT NOTE! Not complete main chain atoms for residue A 103 # IMPORTANT NOTE! Not complete main chain atoms for residue N 104 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 105 # IMPORTANT NOTE! Not complete main chain atoms for residue F 106 # IMPORTANT NOTE! Not complete main chain atoms for residue L 107 # Checking the TS prediction MODEL 1 (DONE) # MODEL index: 1 # Target name: T0129 # Total number of residues in target: 182 # Total number of residues in model: 35 # Total number of atoms in model: 35 # Number of atoms with 1.0 occupancy: 35 # Number of fragments in model: 1 # Number of METHOD records: 1 # No errors. # Number of Warnings: 35 ################################ # # # SUBMISSION # # # ################################ # # # BEGIN # # # ################################ PFRMAT TS TARGET T0129 AUTHOR 6269-7633-6117 METHOD CAFASP MODEL 1 PARENT 1EKB_B ATOM 208 CA THR 73 10.445 -8.760 9.778 1.00 1.00 ATOM 209 CA LEU 74 10.567 -5.486 11.659 1.00 1.00 ATOM 210 CA SER 75 12.295 -3.226 9.147 1.00 1.00 ATOM 211 CA ASP 76 11.643 0.188 10.610 1.00 1.00 ATOM 212 CA VAL 77 9.910 2.150 13.333 1.00 1.00 ATOM 213 CA GLU 78 7.663 5.018 12.214 1.00 1.00 ATOM 214 CA GLY 79 9.708 8.059 13.215 1.00 1.00 ATOM 215 CA PHE 80 9.198 11.336 11.332 1.00 1.00 ATOM 216 CA THR 81 8.788 13.227 8.065 1.00 1.00 ATOM 217 CA PHE 82 7.583 16.479 6.506 1.00 1.00 ATOM 219 CA GLU 83 3.822 16.206 6.889 1.00 1.00 ATOM 220 CA LEU 84 2.220 13.063 5.453 1.00 1.00 ATOM 221 CA GLY 85 1.361 11.504 2.087 1.00 1.00 ATOM 0 CA LEU 86 3.050 14.409 0.285 1.00 1.00 ATOM 222 CA THR 87 4.772 13.605 -3.015 1.00 1.00 ATOM 223 CA GLU 88 8.561 13.363 -2.932 1.00 1.00 ATOM 224 CA ASP 89 8.320 13.599 0.872 1.00 1.00 ATOM 225 CA GLU 90 8.915 10.023 2.106 1.00 1.00 ATOM 226 CA ASN 91 8.168 8.925 5.641 1.00 1.00 ATOM 227 CA VAL 92 11.299 8.358 7.711 1.00 1.00 ATOM 228 CA PHE 93 11.730 5.328 9.951 1.00 1.00 ATOM 229 CA THR 94 14.392 4.120 12.336 1.00 1.00 ATOM 230 CA GLN 95 16.279 1.374 10.436 1.00 1.00 ATOM 231 CA ALA 96 15.912 -1.644 12.731 1.00 1.00 ATOM 232 CA ASP 97 18.736 -3.773 11.295 1.00 1.00 ATOM 233 CA SER 98 21.032 -1.054 12.691 1.00 1.00 ATOM 234 CA LEU 99 19.722 -1.705 16.212 1.00 1.00 ATOM 235 CA SER 100 19.001 -5.407 15.995 1.00 1.00 ATOM 236 CA ASP 101 21.730 -6.328 18.505 1.00 1.00 ATOM 237 CA TRP 102 20.919 -3.666 21.083 1.00 1.00 ATOM 238 CA ALA 103 17.323 -4.909 20.950 1.00 1.00 ATOM 239 CA ASN 104 18.087 -8.627 21.194 1.00 1.00 ATOM 240 CA GLN 105 20.171 -7.935 24.283 1.00 1.00 ATOM 241 CA PHE 106 17.005 -7.107 26.226 1.00 1.00 ATOM 242 CA LEU 107 15.230 -10.265 25.048 1.00 1.00 TER END ################################ # # # END # # # ################################ From mailer@bialko.llnl.gov Tue Jun 4 12:02:09 2002 Date: Tue, 4 Jun 2002 12:02:01 -0700 (PDT) From: Automatic Reply To: karplus@soe.ucsc.edu Subject: T0129 TS samt99.pdb 2 X-SpamBouncer: 1.4 (10/07/01) X-SBPass: NoBounce X-SBClass: OK # # Protein Structure Prediction Center, LLNL, Livermore, CA # Verification system Tue Jun 4 11:35:44 PDT 2002 by Adam Zemla # # The PIN number of your submission is: PIN_472287_10281 # (PIN number is not an ACCESSION CODE) # Thank you for your submission. Your prediction has been accepted with an ACCESSION CODE: T0129TS007_2 Current information on models submitted in prediction T0129TS007 MODEL_INDEX PIN CODE DATE E-mail T0129TS007_2 PIN_472287_10281 6269-7633-6117 06/04/02 11:35:44 casp5@bialko.llnl.gov T0129TS007_1 PIN_466196_10280 6269-7633-6117 06/04/02 11:35:30 casp5@bialko.llnl.gov PLEASE NOTE: Submission of a duplicate prediction (same target, format, model index) will REPLACE an existing submission (ACCESSION CODE), provided it is received before the target has expired. The current status of models accepted for target T0129 MODEL_INDEX PIN CODE DATE E-mail T0129TS007_1 PIN_466196_10280 6269-7633-6117 06/04/02 11:35:30 casp5@bialko.llnl.gov T0129TS007_2 PIN_472287_10281 6269-7633-6117 06/04/02 11:35:44 casp5@bialko.llnl.gov T0129AL007_3 PIN_446619_10049 6269-7633-6117 05/28/02 17:33:48 casp5@bialko.llnl.gov T0129AL007_4 PIN_451089_10050 6269-7633-6117 05/28/02 17:34:02 casp5@bialko.llnl.gov T0129AL007_5 PIN_454224_10051 6269-7633-6117 05/28/02 17:34:17 casp5@bialko.llnl.gov For more information on accepted models submitted to CASP5 see: http://PredictionCenter.llnl.gov/casp5/models/casp5-models.html Please check below if the verified data of your submission is correct. # Reading prediction format TS PFRMAT TS TARGET T0129 AUTHOR 6269-7633-6117 # Reading MODEL 2 PARENT 1E79_A # Loading PARENT structure: 1e79 (chain: A) # Number of residues in PARENT structure: 492 # Reading prediction format TS (DONE) # Checking the TS prediction MODEL 2 # IMPORTANT NOTE! Not complete main chain atoms for residue N 52 # !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! # # It is requested that coordinate data be supplied for at least # # all non-hydrogen main chain atoms, i.e. the N, CA, C and O # # atoms of every residue. Specifically, if only CA atoms are # # predicted by the method, predictors are encouraged to build # # the main chain atoms for every residue before submission to # # CASP. If only CA atoms were submitted it would not be possible # # to run most of the analysis software, which would severely # # limit the evaluation of that prediction. # # !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! # # IMPORTANT NOTE! Not complete main chain atoms for residue H 53 # IMPORTANT NOTE! Not complete main chain atoms for residue A 54 # IMPORTANT NOTE! Not complete main chain atoms for residue Y 55 # IMPORTANT NOTE! Not complete main chain atoms for residue P 56 # IMPORTANT NOTE! Not complete main chain atoms for residue T 57 # IMPORTANT NOTE! Not complete main chain atoms for residue G 58 # IMPORTANT NOTE! Not complete main chain atoms for residue L 59 # IMPORTANT NOTE! Not complete main chain atoms for residue V 60 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 61 # IMPORTANT NOTE! Not complete main chain atoms for residue P 62 # IMPORTANT NOTE! Not complete main chain atoms for residue V 63 # IMPORTANT NOTE! Not complete main chain atoms for residue T 64 # IMPORTANT NOTE! Not complete main chain atoms for residue E 65 # IMPORTANT NOTE! Not complete main chain atoms for residue L 66 # IMPORTANT NOTE! Not complete main chain atoms for residue Y 67 # IMPORTANT NOTE! Not complete main chain atoms for residue E 68 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 69 # IMPORTANT NOTE! Not complete main chain atoms for residue I 70 # IMPORTANT NOTE! Not complete main chain atoms for residue S 71 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 72 # IMPORTANT NOTE! Not complete main chain atoms for residue T 73 # IMPORTANT NOTE! Not complete main chain atoms for residue L 74 # IMPORTANT NOTE! Not complete main chain atoms for residue G 79 # IMPORTANT NOTE! Not complete main chain atoms for residue F 80 # IMPORTANT NOTE! Not complete main chain atoms for residue T 81 # IMPORTANT NOTE! Not complete main chain atoms for residue F 82 # IMPORTANT NOTE! Not complete main chain atoms for residue E 83 # IMPORTANT NOTE! Not complete main chain atoms for residue L 84 # IMPORTANT NOTE! Not complete main chain atoms for residue G 85 # IMPORTANT NOTE! Not complete main chain atoms for residue L 86 # IMPORTANT NOTE! Not complete main chain atoms for residue T 87 # IMPORTANT NOTE! Not complete main chain atoms for residue E 88 # IMPORTANT NOTE! Not complete main chain atoms for residue D 89 # IMPORTANT NOTE! Not complete main chain atoms for residue E 90 # IMPORTANT NOTE! Not complete main chain atoms for residue N 91 # IMPORTANT NOTE! Not complete main chain atoms for residue V 92 # IMPORTANT NOTE! Not complete main chain atoms for residue F 93 # IMPORTANT NOTE! Not complete main chain atoms for residue T 94 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 95 # IMPORTANT NOTE! Not complete main chain atoms for residue A 96 # IMPORTANT NOTE! Not complete main chain atoms for residue D 97 # IMPORTANT NOTE! Not complete main chain atoms for residue S 98 # IMPORTANT NOTE! Not complete main chain atoms for residue L 99 # IMPORTANT NOTE! Not complete main chain atoms for residue S 100 # IMPORTANT NOTE! Not complete main chain atoms for residue D 101 # IMPORTANT NOTE! Not complete main chain atoms for residue W 102 # IMPORTANT NOTE! Not complete main chain atoms for residue A 103 # IMPORTANT NOTE! Not complete main chain atoms for residue N 104 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 105 # IMPORTANT NOTE! Not complete main chain atoms for residue F 106 # IMPORTANT NOTE! Not complete main chain atoms for residue L 107 # IMPORTANT NOTE! Not complete main chain atoms for residue L 108 # IMPORTANT NOTE! Not complete main chain atoms for residue G 109 # IMPORTANT NOTE! Not complete main chain atoms for residue I 110 # IMPORTANT NOTE! Not complete main chain atoms for residue G 111 # IMPORTANT NOTE! Not complete main chain atoms for residue L 112 # IMPORTANT NOTE! Not complete main chain atoms for residue A 113 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 114 # IMPORTANT NOTE! Not complete main chain atoms for residue P 115 # IMPORTANT NOTE! Not complete main chain atoms for residue E 116 # IMPORTANT NOTE! Not complete main chain atoms for residue L 117 # IMPORTANT NOTE! Not complete main chain atoms for residue A 118 # IMPORTANT NOTE! Not complete main chain atoms for residue K 119 # IMPORTANT NOTE! Not complete main chain atoms for residue E 120 # IMPORTANT NOTE! Not complete main chain atoms for residue K 121 # IMPORTANT NOTE! Not complete main chain atoms for residue G 122 # IMPORTANT NOTE! Not complete main chain atoms for residue E 123 # IMPORTANT NOTE! Not complete main chain atoms for residue I 124 # IMPORTANT NOTE! Not complete main chain atoms for residue G 125 # IMPORTANT NOTE! Not complete main chain atoms for residue E 126 # IMPORTANT NOTE! Not complete main chain atoms for residue A 127 # IMPORTANT NOTE! Not complete main chain atoms for residue V 128 # IMPORTANT NOTE! Not complete main chain atoms for residue D 129 # IMPORTANT NOTE! Not complete main chain atoms for residue D 130 # IMPORTANT NOTE! Not complete main chain atoms for residue L 131 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 132 # IMPORTANT NOTE! Not complete main chain atoms for residue D 133 # IMPORTANT NOTE! Not complete main chain atoms for residue I 134 # IMPORTANT NOTE! Not complete main chain atoms for residue C 135 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 136 # IMPORTANT NOTE! Not complete main chain atoms for residue L 137 # IMPORTANT NOTE! Not complete main chain atoms for residue G 138 # IMPORTANT NOTE! Not complete main chain atoms for residue Y 139 # IMPORTANT NOTE! Not complete main chain atoms for residue D 140 # IMPORTANT NOTE! Not complete main chain atoms for residue E 141 # IMPORTANT NOTE! Not complete main chain atoms for residue D 142 # IMPORTANT NOTE! Not complete main chain atoms for residue D 143 # IMPORTANT NOTE! Not complete main chain atoms for residue N 144 # IMPORTANT NOTE! Not complete main chain atoms for residue E 145 # IMPORTANT NOTE! Not complete main chain atoms for residue E 146 # IMPORTANT NOTE! Not complete main chain atoms for residue E 147 # IMPORTANT NOTE! Not complete main chain atoms for residue L 148 # IMPORTANT NOTE! Not complete main chain atoms for residue A 149 # IMPORTANT NOTE! Not complete main chain atoms for residue E 150 # IMPORTANT NOTE! Not complete main chain atoms for residue A 151 # IMPORTANT NOTE! Not complete main chain atoms for residue L 152 # IMPORTANT NOTE! Not complete main chain atoms for residue E 153 # IMPORTANT NOTE! Not complete main chain atoms for residue E 154 # IMPORTANT NOTE! Not complete main chain atoms for residue I 155 # IMPORTANT NOTE! Not complete main chain atoms for residue I 156 # IMPORTANT NOTE! Not complete main chain atoms for residue E 157 # IMPORTANT NOTE! Not complete main chain atoms for residue Y 158 # IMPORTANT NOTE! Not complete main chain atoms for residue V 159 # IMPORTANT NOTE! Not complete main chain atoms for residue R 160 # Checking the TS prediction MODEL 2 (DONE) # MODEL index: 2 # Target name: T0129 # Total number of residues in target: 182 # Total number of residues in model: 105 # Total number of atoms in model: 105 # Number of atoms with 1.0 occupancy: 105 # Number of fragments in model: 1 # Number of METHOD records: 1 # No errors. # Number of Warnings: 105 ################################ # # # SUBMISSION # # # ################################ # # # BEGIN # # # ################################ PFRMAT TS TARGET T0129 AUTHOR 6269-7633-6117 METHOD CAFASP MODEL 2 PARENT 1E79_A ATOM 291 CA ASN 52 114.399 78.296 60.888 1.00 1.00 ATOM 292 CA HIS 53 113.505 74.703 59.988 1.00 1.00 ATOM 293 CA ALA 54 117.260 74.268 59.579 1.00 1.00 ATOM 294 CA TYR 55 117.353 76.266 56.320 1.00 1.00 ATOM 295 CA PRO 56 120.338 78.501 55.554 1.00 1.00 ATOM 296 CA THR 57 120.004 82.283 55.672 1.00 1.00 ATOM 297 CA GLY 58 120.317 82.394 51.875 1.00 1.00 ATOM 298 CA LEU 59 117.349 80.138 51.004 1.00 1.00 ATOM 299 CA VAL 60 115.160 83.184 50.305 1.00 1.00 ATOM 300 CA GLN 61 117.834 84.564 47.976 1.00 1.00 ATOM 301 CA PRO 62 117.836 81.154 46.306 1.00 1.00 ATOM 302 CA VAL 63 114.245 81.545 45.133 1.00 1.00 ATOM 303 CA THR 64 114.216 85.340 44.642 1.00 1.00 ATOM 304 CA GLU 65 116.972 85.358 42.020 1.00 1.00 ATOM 305 CA LEU 66 115.236 82.471 40.240 1.00 1.00 ATOM 306 CA TYR 67 111.787 84.069 40.003 1.00 1.00 ATOM 307 CA GLU 68 112.973 87.575 39.105 1.00 1.00 ATOM 308 CA GLN 69 114.334 86.069 35.887 1.00 1.00 ATOM 309 CA ILE 70 110.705 85.745 34.769 1.00 1.00 ATOM 310 CA SER 71 109.747 89.000 33.015 1.00 1.00 ATOM 311 CA GLN 72 108.027 90.958 30.265 1.00 1.00 ATOM 312 CA THR 73 110.500 92.737 27.973 1.00 1.00 ATOM 313 CA LEU 74 109.870 96.019 26.150 1.00 1.00 ATOM 314 CA GLY 79 109.850 96.476 22.361 1.00 1.00 ATOM 315 CA PHE 80 113.496 97.545 22.167 1.00 1.00 ATOM 316 CA THR 81 114.324 94.160 23.690 1.00 1.00 ATOM 317 CA PHE 82 112.134 92.158 21.331 1.00 1.00 ATOM 318 CA GLU 83 108.903 92.207 23.324 1.00 1.00 ATOM 319 CA LEU 84 109.435 88.573 24.389 1.00 1.00 ATOM 320 CA GLY 85 108.439 87.179 27.781 1.00 1.00 ATOM 321 CA LEU 86 108.821 84.433 30.357 1.00 1.00 ATOM 322 CA THR 87 105.986 83.534 32.724 1.00 1.00 ATOM 323 CA GLU 88 106.549 81.456 35.851 1.00 1.00 ATOM 324 CA ASP 89 104.357 79.051 37.764 1.00 1.00 ATOM 325 CA GLU 90 106.320 77.956 40.821 1.00 1.00 ATOM 326 CA ASN 91 104.776 75.219 42.959 1.00 1.00 ATOM 327 CA VAL 92 104.980 74.980 46.757 1.00 1.00 ATOM 328 CA PHE 93 103.757 72.101 48.918 1.00 1.00 ATOM 329 CA THR 94 102.353 73.176 52.285 1.00 1.00 ATOM 330 CA GLN 95 101.966 70.860 55.272 1.00 1.00 ATOM 331 CA ALA 96 98.553 70.766 56.934 1.00 1.00 ATOM 332 CA ASP 97 97.651 74.029 55.212 1.00 1.00 ATOM 333 CA SER 98 100.320 76.118 56.950 1.00 1.00 ATOM 334 CA LEU 99 101.001 78.931 54.487 1.00 1.00 ATOM 335 CA SER 100 103.021 80.670 57.210 1.00 1.00 ATOM 336 CA ASP 101 105.763 78.044 57.186 1.00 1.00 ATOM 337 CA TRP 102 109.211 79.326 56.143 1.00 1.00 ATOM 338 CA ALA 103 109.620 78.301 52.504 1.00 1.00 ATOM 339 CA ASN 104 105.970 79.009 51.671 1.00 1.00 ATOM 340 CA GLN 105 106.262 82.445 53.298 1.00 1.00 ATOM 341 CA PHE 106 109.308 83.218 51.136 1.00 1.00 ATOM 342 CA LEU 107 107.754 82.221 47.810 1.00 1.00 ATOM 343 CA LEU 108 104.384 83.832 48.573 1.00 1.00 ATOM 344 CA GLY 109 106.103 87.194 49.067 1.00 1.00 ATOM 345 CA ILE 110 108.362 86.846 46.020 1.00 1.00 ATOM 346 CA GLY 111 105.528 86.194 43.569 1.00 1.00 ATOM 347 CA LEU 112 102.969 88.512 42.003 1.00 1.00 ATOM 348 CA ALA 113 100.031 86.434 43.259 1.00 1.00 ATOM 349 CA GLN 114 98.954 82.977 44.404 1.00 1.00 ATOM 350 CA PRO 115 96.448 80.218 43.690 1.00 1.00 ATOM 351 CA GLU 116 95.649 78.482 46.979 1.00 1.00 ATOM 352 CA LEU 117 94.313 74.918 46.891 1.00 1.00 ATOM 353 CA ALA 118 92.447 73.220 49.759 1.00 1.00 ATOM 354 CA LYS 119 91.739 69.625 50.787 1.00 1.00 ATOM 355 CA GLU 120 88.341 70.412 52.294 1.00 1.00 ATOM 356 CA LYS 121 87.277 72.085 49.047 1.00 1.00 ATOM 357 CA GLY 122 88.528 69.089 47.065 1.00 1.00 ATOM 358 CA GLU 123 86.615 66.338 48.899 1.00 1.00 ATOM 359 CA ILE 124 83.497 68.524 49.023 1.00 1.00 ATOM 360 CA GLY 125 83.255 68.431 45.233 1.00 1.00 ATOM 395 CA GLU 126 82.084 87.492 47.570 1.00 1.00 ATOM 396 CA ALA 127 78.540 88.271 48.722 1.00 1.00 ATOM 397 CA VAL 128 77.790 84.553 48.869 1.00 1.00 ATOM 398 CA ASP 129 80.793 83.863 51.106 1.00 1.00 ATOM 399 CA ASP 130 79.516 86.167 53.856 1.00 1.00 ATOM 400 CA LEU 131 76.229 84.260 54.054 1.00 1.00 ATOM 401 CA GLN 132 77.399 80.761 53.120 1.00 1.00 ATOM 402 CA ASP 133 77.180 79.774 56.799 1.00 1.00 ATOM 403 CA ILE 134 73.372 79.949 56.650 1.00 1.00 ATOM 404 CA CYS 135 73.022 77.404 53.832 1.00 1.00 ATOM 405 CA GLN 136 71.843 74.674 56.208 1.00 1.00 ATOM 406 CA LEU 137 70.560 77.089 58.848 1.00 1.00 ATOM 407 CA GLY 138 68.369 79.571 56.975 1.00 1.00 ATOM 408 CA TYR 139 64.680 78.903 57.608 1.00 1.00 ATOM 409 CA ASP 140 63.736 82.424 58.669 1.00 1.00 ATOM 410 CA GLU 141 65.812 83.966 55.867 1.00 1.00 ATOM 411 CA ASP 142 64.670 86.976 53.852 1.00 1.00 ATOM 412 CA ASP 143 64.266 87.098 50.066 1.00 1.00 ATOM 413 CA ASN 144 67.518 88.939 49.343 1.00 1.00 ATOM 414 CA GLU 145 69.904 86.821 51.423 1.00 1.00 ATOM 415 CA GLU 146 68.092 83.749 50.100 1.00 1.00 ATOM 416 CA GLU 147 68.799 84.916 46.546 1.00 1.00 ATOM 417 CA LEU 148 72.497 85.407 47.318 1.00 1.00 ATOM 418 CA ALA 149 72.672 81.797 48.484 1.00 1.00 ATOM 419 CA GLU 150 71.149 80.489 45.249 1.00 1.00 ATOM 420 CA ALA 151 73.302 82.619 42.960 1.00 1.00 ATOM 421 CA LEU 152 76.466 81.595 44.816 1.00 1.00 ATOM 422 CA GLU 153 75.875 77.844 45.019 1.00 1.00 ATOM 423 CA GLU 154 75.395 77.987 41.257 1.00 1.00 ATOM 424 CA ILE 155 78.288 80.247 40.299 1.00 1.00 ATOM 425 CA ILE 156 80.312 77.843 42.472 1.00 1.00 ATOM 426 CA GLU 157 79.158 74.876 40.388 1.00 1.00 ATOM 427 CA TYR 158 80.129 76.729 37.211 1.00 1.00 ATOM 428 CA VAL 159 83.701 77.028 38.486 1.00 1.00 ATOM 429 CA ARG 160 84.043 73.258 38.826 1.00 1.00 TER END ################################ # # # END # # # ################################ From mailer@bialko.llnl.gov Tue Jun 4 12:02:20 2002 Date: Tue, 4 Jun 2002 12:02:12 -0700 (PDT) From: Automatic Reply To: karplus@soe.ucsc.edu Subject: T0129 TS samt99.pdb 4 X-SpamBouncer: 1.4 (10/07/01) X-SBPass: NoBounce X-SBClass: OK # # Protein Structure Prediction Center, LLNL, Livermore, CA # Verification system Tue Jun 4 11:35:59 PDT 2002 by Adam Zemla # # The PIN number of your submission is: PIN_468359_10282 # (PIN number is not an ACCESSION CODE) # Thank you for your submission. Your prediction has been accepted with an ACCESSION CODE: T0129TS007_4 Current information on models submitted in prediction T0129TS007 MODEL_INDEX PIN CODE DATE E-mail T0129TS007_4 PIN_468359_10282 6269-7633-6117 06/04/02 11:35:59 casp5@bialko.llnl.gov T0129TS007_2 PIN_472287_10281 6269-7633-6117 06/04/02 11:35:44 casp5@bialko.llnl.gov T0129TS007_1 PIN_466196_10280 6269-7633-6117 06/04/02 11:35:30 casp5@bialko.llnl.gov PLEASE NOTE: Submission of a duplicate prediction (same target, format, model index) will REPLACE an existing submission (ACCESSION CODE), provided it is received before the target has expired. The current status of models accepted for target T0129 MODEL_INDEX PIN CODE DATE E-mail T0129TS007_1 PIN_466196_10280 6269-7633-6117 06/04/02 11:35:30 casp5@bialko.llnl.gov T0129TS007_2 PIN_472287_10281 6269-7633-6117 06/04/02 11:35:44 casp5@bialko.llnl.gov T0129AL007_3 PIN_446619_10049 6269-7633-6117 05/28/02 17:33:48 casp5@bialko.llnl.gov T0129TS007_4 PIN_468359_10282 6269-7633-6117 06/04/02 11:35:59 casp5@bialko.llnl.gov T0129AL007_5 PIN_454224_10051 6269-7633-6117 05/28/02 17:34:17 casp5@bialko.llnl.gov For more information on accepted models submitted to CASP5 see: http://PredictionCenter.llnl.gov/casp5/models/casp5-models.html Please check below if the verified data of your submission is correct. # Reading prediction format TS PFRMAT TS TARGET T0129 AUTHOR 6269-7633-6117 # Reading MODEL 4 PARENT 1FND # Loading PARENT structure: 1fnd (chain: ) # Number of residues in PARENT structure: 296 # Reading prediction format TS (DONE) # Checking the TS prediction MODEL 4 # IMPORTANT NOTE! Not complete main chain atoms for residue G 26 # !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! # # It is requested that coordinate data be supplied for at least # # all non-hydrogen main chain atoms, i.e. the N, CA, C and O # # atoms of every residue. Specifically, if only CA atoms are # # predicted by the method, predictors are encouraged to build # # the main chain atoms for every residue before submission to # # CASP. If only CA atoms were submitted it would not be possible # # to run most of the analysis software, which would severely # # limit the evaluation of that prediction. # # !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! # # IMPORTANT NOTE! Not complete main chain atoms for residue F 27 # IMPORTANT NOTE! Not complete main chain atoms for residue L 28 # IMPORTANT NOTE! Not complete main chain atoms for residue S 29 # IMPORTANT NOTE! Not complete main chain atoms for residue G 30 # IMPORTANT NOTE! Not complete main chain atoms for residue L 31 # IMPORTANT NOTE! Not complete main chain atoms for residue L 32 # IMPORTANT NOTE! Not complete main chain atoms for residue C 33 # IMPORTANT NOTE! Not complete main chain atoms for residue G 34 # IMPORTANT NOTE! Not complete main chain atoms for residue L 36 # IMPORTANT NOTE! Not complete main chain atoms for residue K 37 # IMPORTANT NOTE! Not complete main chain atoms for residue D 38 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 39 # IMPORTANT NOTE! Not complete main chain atoms for residue S 40 # IMPORTANT NOTE! Not complete main chain atoms for residue W 41 # IMPORTANT NOTE! Not complete main chain atoms for residue L 42 # IMPORTANT NOTE! Not complete main chain atoms for residue P 43 # IMPORTANT NOTE! Not complete main chain atoms for residue L 44 # IMPORTANT NOTE! Not complete main chain atoms for residue L 45 # IMPORTANT NOTE! Not complete main chain atoms for residue Y 46 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 47 # IMPORTANT NOTE! Not complete main chain atoms for residue F 48 # IMPORTANT NOTE! Not complete main chain atoms for residue S 49 # IMPORTANT NOTE! Not complete main chain atoms for residue N 50 # Checking the TS prediction MODEL 4 (DONE) # MODEL index: 4 # Target name: T0129 # Total number of residues in target: 182 # Total number of residues in model: 24 # Total number of atoms in model: 24 # Number of atoms with 1.0 occupancy: 24 # Number of fragments in model: 1 # Number of METHOD records: 1 # No errors. # Number of Warnings: 24 ################################ # # # SUBMISSION # # # ################################ # # # BEGIN # # # ################################ PFRMAT TS TARGET T0129 AUTHOR 6269-7633-6117 METHOD CAFASP MODEL 4 PARENT 1FND ATOM 130 CA GLY 26 24.526 -4.750 0.489 1.00 1.00 ATOM 131 CA PHE 27 28.185 -3.864 -0.269 1.00 1.00 ATOM 132 CA LEU 28 29.563 -2.335 2.857 1.00 1.00 ATOM 133 CA SER 29 27.381 -4.210 5.313 1.00 1.00 ATOM 134 CA GLY 30 28.354 -7.614 4.033 1.00 1.00 ATOM 135 CA LEU 31 31.985 -6.582 3.764 1.00 1.00 ATOM 136 CA LEU 32 31.966 -5.501 7.378 1.00 1.00 ATOM 137 CA CYS 33 29.998 -8.464 8.766 1.00 1.00 ATOM 138 CA GLY 34 32.296 -10.901 7.020 1.00 1.00 ATOM 139 CA LEU 36 35.449 -9.406 8.560 1.00 1.00 ATOM 140 CA LYS 37 37.894 -11.711 10.335 1.00 1.00 ATOM 141 CA ASP 38 40.240 -10.651 13.167 1.00 1.00 ATOM 142 CA GLN 39 43.361 -9.348 11.491 1.00 1.00 ATOM 143 CA SER 40 41.704 -7.957 8.440 1.00 1.00 ATOM 144 CA TRP 41 42.320 -4.323 7.418 1.00 1.00 ATOM 145 CA LEU 42 39.674 -1.660 7.066 1.00 1.00 ATOM 146 CA PRO 43 39.788 1.811 5.592 1.00 1.00 ATOM 147 CA LEU 44 38.120 4.447 7.756 1.00 1.00 ATOM 148 CA LEU 45 37.481 8.175 7.515 1.00 1.00 ATOM 149 CA TYR 46 36.237 10.846 9.853 1.00 1.00 ATOM 150 CA GLN 47 35.294 11.440 12.527 1.00 1.00 ATOM 151 CA PHE 48 32.073 13.010 11.268 1.00 1.00 ATOM 152 CA SER 49 29.237 14.787 13.036 1.00 1.00 ATOM 153 CA ASN 50 28.085 17.288 15.513 1.00 1.00 TER END ################################ # # # END # # # ################################ From mailer@bialko.llnl.gov Tue Jun 4 12:04:20 2002 Date: Tue, 4 Jun 2002 12:04:12 -0700 (PDT) From: Automatic Reply To: karplus@soe.ucsc.edu Subject: T0129 TS samt99.pdb 3 X-SpamBouncer: 1.4 (10/07/01) X-SBPass: NoBounce X-SBClass: OK # # Protein Structure Prediction Center, LLNL, Livermore, CA # Verification system Tue Jun 4 11:38:01 PDT 2002 by Adam Zemla # # The PIN number of your submission is: PIN_497859_10287 # (PIN number is not an ACCESSION CODE) # Thank you for your submission. Your prediction has been accepted with an ACCESSION CODE: T0129TS007_3 Current information on models submitted in prediction T0129TS007 MODEL_INDEX PIN CODE DATE E-mail T0129TS007_3 PIN_497859_10287 6269-7633-6117 06/04/02 11:38:01 casp5@bialko.llnl.gov T0129TS007_4 PIN_468359_10282 6269-7633-6117 06/04/02 11:35:59 casp5@bialko.llnl.gov T0129TS007_2 PIN_472287_10281 6269-7633-6117 06/04/02 11:35:44 casp5@bialko.llnl.gov T0129TS007_1 PIN_466196_10280 6269-7633-6117 06/04/02 11:35:30 casp5@bialko.llnl.gov PLEASE NOTE: Submission of a duplicate prediction (same target, format, model index) will REPLACE an existing submission (ACCESSION CODE), provided it is received before the target has expired. The current status of models accepted for target T0129 MODEL_INDEX PIN CODE DATE E-mail T0129TS007_1 PIN_466196_10280 6269-7633-6117 06/04/02 11:35:30 casp5@bialko.llnl.gov T0129TS007_2 PIN_472287_10281 6269-7633-6117 06/04/02 11:35:44 casp5@bialko.llnl.gov T0129TS007_3 PIN_497859_10287 6269-7633-6117 06/04/02 11:38:01 casp5@bialko.llnl.gov T0129TS007_4 PIN_468359_10282 6269-7633-6117 06/04/02 11:35:59 casp5@bialko.llnl.gov T0129AL007_5 PIN_454224_10051 6269-7633-6117 05/28/02 17:34:17 casp5@bialko.llnl.gov For more information on accepted models submitted to CASP5 see: http://PredictionCenter.llnl.gov/casp5/models/casp5-models.html Please check below if the verified data of your submission is correct. # Reading prediction format TS PFRMAT TS TARGET T0129 AUTHOR 6269-7633-6117 # Reading MODEL 3 PARENT 1BMF_A # Loading PARENT structure: 1bmf (chain: A) # Number of residues in PARENT structure: 487 # Reading prediction format TS (DONE) # Checking the TS prediction MODEL 3 # IMPORTANT NOTE! Not complete main chain atoms for residue A 54 # !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! # # It is requested that coordinate data be supplied for at least # # all non-hydrogen main chain atoms, i.e. the N, CA, C and O # # atoms of every residue. Specifically, if only CA atoms are # # predicted by the method, predictors are encouraged to build # # the main chain atoms for every residue before submission to # # CASP. If only CA atoms were submitted it would not be possible # # to run most of the analysis software, which would severely # # limit the evaluation of that prediction. # # !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! # # IMPORTANT NOTE! Not complete main chain atoms for residue Y 55 # IMPORTANT NOTE! Not complete main chain atoms for residue P 56 # IMPORTANT NOTE! Not complete main chain atoms for residue T 57 # IMPORTANT NOTE! Not complete main chain atoms for residue G 58 # IMPORTANT NOTE! Not complete main chain atoms for residue L 59 # IMPORTANT NOTE! Not complete main chain atoms for residue V 60 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 61 # IMPORTANT NOTE! Not complete main chain atoms for residue P 62 # IMPORTANT NOTE! Not complete main chain atoms for residue V 63 # IMPORTANT NOTE! Not complete main chain atoms for residue T 64 # IMPORTANT NOTE! Not complete main chain atoms for residue E 65 # IMPORTANT NOTE! Not complete main chain atoms for residue L 66 # IMPORTANT NOTE! Not complete main chain atoms for residue Y 67 # IMPORTANT NOTE! Not complete main chain atoms for residue E 68 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 69 # IMPORTANT NOTE! Not complete main chain atoms for residue I 70 # IMPORTANT NOTE! Not complete main chain atoms for residue S 71 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 72 # IMPORTANT NOTE! Not complete main chain atoms for residue T 73 # IMPORTANT NOTE! Not complete main chain atoms for residue L 74 # IMPORTANT NOTE! Not complete main chain atoms for residue S 75 # IMPORTANT NOTE! Not complete main chain atoms for residue D 76 # IMPORTANT NOTE! Not complete main chain atoms for residue V 77 # IMPORTANT NOTE! Not complete main chain atoms for residue E 78 # IMPORTANT NOTE! Not complete main chain atoms for residue G 79 # IMPORTANT NOTE! Not complete main chain atoms for residue L 84 # IMPORTANT NOTE! Not complete main chain atoms for residue G 85 # IMPORTANT NOTE! Not complete main chain atoms for residue L 86 # IMPORTANT NOTE! Not complete main chain atoms for residue T 87 # IMPORTANT NOTE! Not complete main chain atoms for residue E 88 # IMPORTANT NOTE! Not complete main chain atoms for residue D 89 # IMPORTANT NOTE! Not complete main chain atoms for residue E 90 # IMPORTANT NOTE! Not complete main chain atoms for residue N 91 # IMPORTANT NOTE! Not complete main chain atoms for residue V 92 # IMPORTANT NOTE! Not complete main chain atoms for residue F 93 # IMPORTANT NOTE! Not complete main chain atoms for residue T 94 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 95 # IMPORTANT NOTE! Not complete main chain atoms for residue A 96 # IMPORTANT NOTE! Not complete main chain atoms for residue D 97 # IMPORTANT NOTE! Not complete main chain atoms for residue S 98 # IMPORTANT NOTE! Not complete main chain atoms for residue L 99 # IMPORTANT NOTE! Not complete main chain atoms for residue S 100 # IMPORTANT NOTE! Not complete main chain atoms for residue D 101 # IMPORTANT NOTE! Not complete main chain atoms for residue W 102 # IMPORTANT NOTE! Not complete main chain atoms for residue A 103 # IMPORTANT NOTE! Not complete main chain atoms for residue N 104 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 105 # IMPORTANT NOTE! Not complete main chain atoms for residue F 106 # IMPORTANT NOTE! Not complete main chain atoms for residue L 107 # IMPORTANT NOTE! Not complete main chain atoms for residue L 108 # IMPORTANT NOTE! Not complete main chain atoms for residue G 109 # IMPORTANT NOTE! Not complete main chain atoms for residue I 110 # IMPORTANT NOTE! Not complete main chain atoms for residue G 111 # IMPORTANT NOTE! Not complete main chain atoms for residue L 112 # IMPORTANT NOTE! Not complete main chain atoms for residue A 113 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 114 # IMPORTANT NOTE! Not complete main chain atoms for residue P 115 # IMPORTANT NOTE! Not complete main chain atoms for residue E 116 # IMPORTANT NOTE! Not complete main chain atoms for residue L 117 # IMPORTANT NOTE! Not complete main chain atoms for residue A 118 # IMPORTANT NOTE! Not complete main chain atoms for residue K 119 # IMPORTANT NOTE! Not complete main chain atoms for residue E 120 # IMPORTANT NOTE! Not complete main chain atoms for residue K 121 # IMPORTANT NOTE! Not complete main chain atoms for residue G 122 # IMPORTANT NOTE! Not complete main chain atoms for residue E 123 # IMPORTANT NOTE! Not complete main chain atoms for residue I 124 # IMPORTANT NOTE! Not complete main chain atoms for residue G 125 # IMPORTANT NOTE! Not complete main chain atoms for residue E 126 # IMPORTANT NOTE! Not complete main chain atoms for residue A 127 # IMPORTANT NOTE! Not complete main chain atoms for residue V 128 # IMPORTANT NOTE! Not complete main chain atoms for residue D 129 # IMPORTANT NOTE! Not complete main chain atoms for residue D 130 # IMPORTANT NOTE! Not complete main chain atoms for residue L 131 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 132 # IMPORTANT NOTE! Not complete main chain atoms for residue D 133 # IMPORTANT NOTE! Not complete main chain atoms for residue I 134 # IMPORTANT NOTE! Not complete main chain atoms for residue C 135 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 136 # IMPORTANT NOTE! Not complete main chain atoms for residue L 137 # IMPORTANT NOTE! Not complete main chain atoms for residue G 138 # IMPORTANT NOTE! Not complete main chain atoms for residue Y 139 # IMPORTANT NOTE! Not complete main chain atoms for residue D 140 # IMPORTANT NOTE! Not complete main chain atoms for residue E 141 # IMPORTANT NOTE! Not complete main chain atoms for residue D 142 # IMPORTANT NOTE! Not complete main chain atoms for residue D 143 # IMPORTANT NOTE! Not complete main chain atoms for residue N 144 # IMPORTANT NOTE! Not complete main chain atoms for residue E 145 # IMPORTANT NOTE! Not complete main chain atoms for residue E 146 # IMPORTANT NOTE! Not complete main chain atoms for residue E 147 # IMPORTANT NOTE! Not complete main chain atoms for residue L 148 # IMPORTANT NOTE! Not complete main chain atoms for residue A 149 # IMPORTANT NOTE! Not complete main chain atoms for residue E 150 # IMPORTANT NOTE! Not complete main chain atoms for residue A 151 # IMPORTANT NOTE! Not complete main chain atoms for residue L 152 # IMPORTANT NOTE! Not complete main chain atoms for residue E 153 # IMPORTANT NOTE! Not complete main chain atoms for residue E 154 # IMPORTANT NOTE! Not complete main chain atoms for residue I 155 # IMPORTANT NOTE! Not complete main chain atoms for residue I 156 # IMPORTANT NOTE! Not complete main chain atoms for residue E 157 # IMPORTANT NOTE! Not complete main chain atoms for residue Y 158 # IMPORTANT NOTE! Not complete main chain atoms for residue V 159 # IMPORTANT NOTE! Not complete main chain atoms for residue R 160 # Checking the TS prediction MODEL 3 (DONE) # MODEL index: 3 # Target name: T0129 # Total number of residues in target: 182 # Total number of residues in model: 103 # Total number of atoms in model: 103 # Number of atoms with 1.0 occupancy: 103 # Number of fragments in model: 1 # Number of METHOD records: 1 # No errors. # Number of Warnings: 103 ################################ # # # SUBMISSION # # # ################################ # # # BEGIN # # # ################################ PFRMAT TS TARGET T0129 AUTHOR 6269-7633-6117 METHOD CAFASP MODEL 3 PARENT 1BMF_A ATOM 293 CA ALA 54 121.836 72.398 63.973 1.00 1.00 ATOM 294 CA TYR 55 121.585 74.505 60.757 1.00 1.00 ATOM 295 CA PRO 56 124.630 76.513 59.624 1.00 1.00 ATOM 296 CA THR 57 124.520 80.290 59.859 1.00 1.00 ATOM 297 CA GLY 58 124.306 80.449 56.055 1.00 1.00 ATOM 298 CA LEU 59 121.204 78.307 55.469 1.00 1.00 ATOM 299 CA VAL 60 119.092 81.413 54.932 1.00 1.00 ATOM 300 CA GLN 61 121.573 82.564 52.294 1.00 1.00 ATOM 301 CA PRO 62 121.393 79.137 50.585 1.00 1.00 ATOM 302 CA VAL 63 117.734 79.631 49.739 1.00 1.00 ATOM 303 CA THR 64 117.623 83.400 49.165 1.00 1.00 ATOM 304 CA GLU 65 120.363 83.157 46.607 1.00 1.00 ATOM 305 CA LEU 66 118.299 80.398 44.952 1.00 1.00 ATOM 306 CA TYR 67 114.768 81.909 45.117 1.00 1.00 ATOM 307 CA GLU 68 115.922 85.362 43.966 1.00 1.00 ATOM 308 CA GLN 69 117.064 83.948 40.586 1.00 1.00 ATOM 309 CA ILE 70 113.357 83.727 39.750 1.00 1.00 ATOM 310 CA SER 71 112.137 87.016 38.243 1.00 1.00 ATOM 311 CA GLN 72 110.232 88.874 35.547 1.00 1.00 ATOM 312 CA THR 73 112.632 90.516 33.075 1.00 1.00 ATOM 313 CA LEU 74 112.097 93.769 31.199 1.00 1.00 ATOM 314 CA SER 75 111.550 93.877 27.423 1.00 1.00 ATOM 315 CA ASP 76 114.920 95.535 27.335 1.00 1.00 ATOM 316 CA VAL 77 116.087 92.109 28.530 1.00 1.00 ATOM 317 CA GLU 78 113.574 89.961 26.634 1.00 1.00 ATOM 318 CA GLY 79 110.481 90.124 28.872 1.00 1.00 ATOM 319 CA LEU 84 111.166 86.442 29.686 1.00 1.00 ATOM 320 CA GLY 85 110.359 85.038 33.142 1.00 1.00 ATOM 321 CA LEU 86 111.119 82.340 35.741 1.00 1.00 ATOM 322 CA THR 87 108.265 81.534 38.237 1.00 1.00 ATOM 323 CA GLU 88 109.212 79.297 41.189 1.00 1.00 ATOM 324 CA ASP 89 107.070 76.954 43.246 1.00 1.00 ATOM 325 CA GLU 90 109.288 75.871 46.135 1.00 1.00 ATOM 326 CA ASN 91 107.907 73.266 48.524 1.00 1.00 ATOM 327 CA VAL 92 108.497 73.357 52.285 1.00 1.00 ATOM 328 CA PHE 93 107.393 70.545 54.589 1.00 1.00 ATOM 329 CA THR 94 106.215 71.839 57.963 1.00 1.00 ATOM 330 CA GLN 95 105.952 69.709 61.105 1.00 1.00 ATOM 331 CA ALA 96 102.744 69.568 63.126 1.00 1.00 ATOM 332 CA ASP 97 101.921 72.824 61.299 1.00 1.00 ATOM 333 CA SER 98 104.854 74.721 62.851 1.00 1.00 ATOM 334 CA LEU 99 105.189 77.347 60.166 1.00 1.00 ATOM 335 CA SER 100 107.603 79.200 62.505 1.00 1.00 ATOM 336 CA ASP 101 110.200 76.433 62.722 1.00 1.00 ATOM 337 CA TRP 102 113.530 77.527 61.215 1.00 1.00 ATOM 338 CA ALA 103 113.550 76.617 57.497 1.00 1.00 ATOM 339 CA ASN 104 109.802 77.226 57.030 1.00 1.00 ATOM 340 CA GLN 105 110.459 80.703 58.513 1.00 1.00 ATOM 341 CA PHE 106 113.246 81.579 56.112 1.00 1.00 ATOM 342 CA LEU 107 111.513 80.573 52.915 1.00 1.00 ATOM 343 CA LEU 108 108.200 82.089 53.947 1.00 1.00 ATOM 344 CA GLY 109 110.146 85.260 54.569 1.00 1.00 ATOM 345 CA ILE 110 111.776 85.074 51.141 1.00 1.00 ATOM 346 CA GLY 111 108.833 84.345 48.819 1.00 1.00 ATOM 347 CA LEU 112 105.955 86.487 47.597 1.00 1.00 ATOM 348 CA ALA 113 103.158 84.454 49.186 1.00 1.00 ATOM 349 CA GLN 114 102.245 81.038 50.546 1.00 1.00 ATOM 350 CA PRO 115 99.592 78.407 49.776 1.00 1.00 ATOM 351 CA GLU 116 98.974 76.836 53.200 1.00 1.00 ATOM 352 CA LEU 117 97.639 73.243 53.140 1.00 1.00 ATOM 353 CA ALA 118 95.984 71.637 56.193 1.00 1.00 ATOM 354 CA LYS 119 95.266 68.096 57.319 1.00 1.00 ATOM 355 CA GLU 120 92.110 69.020 59.221 1.00 1.00 ATOM 356 CA LYS 121 90.786 70.618 56.010 1.00 1.00 ATOM 357 CA GLY 122 91.936 67.682 53.895 1.00 1.00 ATOM 358 CA GLU 123 90.130 65.110 56.077 1.00 1.00 ATOM 359 CA ILE 124 87.077 67.352 56.383 1.00 1.00 ATOM 360 CA GLY 125 86.599 67.019 52.638 1.00 1.00 ATOM 395 CA GLU 126 86.169 86.156 54.544 1.00 1.00 ATOM 396 CA ALA 127 82.716 87.000 55.926 1.00 1.00 ATOM 397 CA VAL 128 81.728 83.354 56.359 1.00 1.00 ATOM 398 CA ASP 129 85.041 82.694 58.061 1.00 1.00 ATOM 399 CA ASP 130 83.980 85.254 60.676 1.00 1.00 ATOM 400 CA LEU 131 80.748 83.361 61.443 1.00 1.00 ATOM 401 CA GLN 132 81.470 79.731 60.448 1.00 1.00 ATOM 402 CA ASP 133 82.090 78.565 64.030 1.00 1.00 ATOM 403 CA ILE 134 78.528 79.576 64.941 1.00 1.00 ATOM 404 CA CYS 135 76.868 77.220 62.487 1.00 1.00 ATOM 405 CA GLN 136 77.045 74.074 64.629 1.00 1.00 ATOM 406 CA LEU 137 75.337 75.749 67.607 1.00 1.00 ATOM 407 CA GLY 138 73.296 78.344 65.728 1.00 1.00 ATOM 408 CA TYR 139 70.149 77.481 67.662 1.00 1.00 ATOM 409 CA ASP 140 68.646 80.769 66.484 1.00 1.00 ATOM 410 CA GLU 141 70.695 83.101 64.301 1.00 1.00 ATOM 411 CA ASP 142 69.174 86.030 62.443 1.00 1.00 ATOM 412 CA ASP 143 68.689 85.556 58.696 1.00 1.00 ATOM 413 CA ASN 144 71.422 88.140 58.085 1.00 1.00 ATOM 414 CA GLU 145 74.277 85.921 59.231 1.00 1.00 ATOM 415 CA GLU 146 72.297 82.772 58.417 1.00 1.00 ATOM 416 CA GLU 147 72.677 84.070 54.876 1.00 1.00 ATOM 417 CA LEU 148 76.461 84.269 55.060 1.00 1.00 ATOM 418 CA ALA 149 76.599 80.707 56.415 1.00 1.00 ATOM 419 CA GLU 150 74.761 79.532 53.318 1.00 1.00 ATOM 420 CA ALA 151 76.864 81.484 50.829 1.00 1.00 ATOM 421 CA LEU 152 79.764 80.258 52.934 1.00 1.00 ATOM 422 CA GLU 153 79.244 76.501 52.486 1.00 1.00 ATOM 423 CA GLU 154 78.329 76.713 48.805 1.00 1.00 ATOM 424 CA ILE 155 81.228 78.970 47.877 1.00 1.00 ATOM 425 CA ILE 156 83.429 76.513 49.800 1.00 1.00 ATOM 426 CA GLU 157 82.068 73.557 47.879 1.00 1.00 ATOM 427 CA TYR 158 82.897 75.397 44.652 1.00 1.00 ATOM 428 CA VAL 159 86.560 75.574 45.637 1.00 1.00 ATOM 429 CA ARG 160 86.756 71.771 45.886 1.00 1.00 TER END ################################ # # # END # # # ################################ From mailer@bialko.llnl.gov Tue Jun 4 12:04:30 2002 Date: Tue, 4 Jun 2002 12:04:23 -0700 (PDT) From: Automatic Reply To: karplus@soe.ucsc.edu Subject: T0129 TS samt99.pdb 5 X-SpamBouncer: 1.4 (10/07/01) X-SBPass: NoBounce X-SBClass: OK # # Protein Structure Prediction Center, LLNL, Livermore, CA # Verification system Tue Jun 4 11:38:16 PDT 2002 by Adam Zemla # # The PIN number of your submission is: PIN_503713_10288 # (PIN number is not an ACCESSION CODE) # Thank you for your submission. Your prediction has been accepted with an ACCESSION CODE: T0129TS007_5 Current information on models submitted in prediction T0129TS007 MODEL_INDEX PIN CODE DATE E-mail T0129TS007_5 PIN_503713_10288 6269-7633-6117 06/04/02 11:38:16 casp5@bialko.llnl.gov T0129TS007_3 PIN_497859_10287 6269-7633-6117 06/04/02 11:38:01 casp5@bialko.llnl.gov T0129TS007_4 PIN_468359_10282 6269-7633-6117 06/04/02 11:35:59 casp5@bialko.llnl.gov T0129TS007_2 PIN_472287_10281 6269-7633-6117 06/04/02 11:35:44 casp5@bialko.llnl.gov T0129TS007_1 PIN_466196_10280 6269-7633-6117 06/04/02 11:35:30 casp5@bialko.llnl.gov PLEASE NOTE: Submission of a duplicate prediction (same target, format, model index) will REPLACE an existing submission (ACCESSION CODE), provided it is received before the target has expired. The current status of models accepted for target T0129 MODEL_INDEX PIN CODE DATE E-mail T0129TS007_1 PIN_466196_10280 6269-7633-6117 06/04/02 11:35:30 casp5@bialko.llnl.gov T0129TS007_2 PIN_472287_10281 6269-7633-6117 06/04/02 11:35:44 casp5@bialko.llnl.gov T0129TS007_3 PIN_497859_10287 6269-7633-6117 06/04/02 11:38:01 casp5@bialko.llnl.gov T0129TS007_4 PIN_468359_10282 6269-7633-6117 06/04/02 11:35:59 casp5@bialko.llnl.gov T0129TS007_5 PIN_503713_10288 6269-7633-6117 06/04/02 11:38:16 casp5@bialko.llnl.gov For more information on accepted models submitted to CASP5 see: http://PredictionCenter.llnl.gov/casp5/models/casp5-models.html Please check below if the verified data of your submission is correct. # Reading prediction format TS PFRMAT TS TARGET T0129 AUTHOR 6269-7633-6117 # Reading MODEL 5 PARENT 1FNC # Loading PARENT structure: 1fnc (chain: ) # Number of residues in PARENT structure: 296 # Reading prediction format TS (DONE) # Checking the TS prediction MODEL 5 # IMPORTANT NOTE! Not complete main chain atoms for residue M 1 # !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! # # It is requested that coordinate data be supplied for at least # # all non-hydrogen main chain atoms, i.e. the N, CA, C and O # # atoms of every residue. Specifically, if only CA atoms are # # predicted by the method, predictors are encouraged to build # # the main chain atoms for every residue before submission to # # CASP. If only CA atoms were submitted it would not be possible # # to run most of the analysis software, which would severely # # limit the evaluation of that prediction. # # !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! # # IMPORTANT NOTE! Not complete main chain atoms for residue L 2 # IMPORTANT NOTE! Not complete main chain atoms for residue I 3 # IMPORTANT NOTE! Not complete main chain atoms for residue S 4 # IMPORTANT NOTE! Not complete main chain atoms for residue H 5 # IMPORTANT NOTE! Not complete main chain atoms for residue S 6 # IMPORTANT NOTE! Not complete main chain atoms for residue D 7 # IMPORTANT NOTE! Not complete main chain atoms for residue L 8 # IMPORTANT NOTE! Not complete main chain atoms for residue N 9 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 10 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 11 # IMPORTANT NOTE! Not complete main chain atoms for residue L 12 # IMPORTANT NOTE! Not complete main chain atoms for residue K 13 # IMPORTANT NOTE! Not complete main chain atoms for residue S 14 # IMPORTANT NOTE! Not complete main chain atoms for residue A 15 # IMPORTANT NOTE! Not complete main chain atoms for residue G 16 # IMPORTANT NOTE! Not complete main chain atoms for residue I 17 # IMPORTANT NOTE! Not complete main chain atoms for residue G 18 # IMPORTANT NOTE! Not complete main chain atoms for residue F 19 # IMPORTANT NOTE! Not complete main chain atoms for residue N 20 # IMPORTANT NOTE! Not complete main chain atoms for residue A 21 # IMPORTANT NOTE! Not complete main chain atoms for residue T 22 # IMPORTANT NOTE! Not complete main chain atoms for residue E 23 # IMPORTANT NOTE! Not complete main chain atoms for residue L 24 # IMPORTANT NOTE! Not complete main chain atoms for residue H 25 # IMPORTANT NOTE! Not complete main chain atoms for residue G 26 # IMPORTANT NOTE! Not complete main chain atoms for residue F 27 # IMPORTANT NOTE! Not complete main chain atoms for residue L 28 # IMPORTANT NOTE! Not complete main chain atoms for residue S 29 # IMPORTANT NOTE! Not complete main chain atoms for residue G 30 # IMPORTANT NOTE! Not complete main chain atoms for residue L 31 # IMPORTANT NOTE! Not complete main chain atoms for residue L 32 # IMPORTANT NOTE! Not complete main chain atoms for residue C 33 # IMPORTANT NOTE! Not complete main chain atoms for residue G 34 # IMPORTANT NOTE! Not complete main chain atoms for residue L 36 # IMPORTANT NOTE! Not complete main chain atoms for residue K 37 # IMPORTANT NOTE! Not complete main chain atoms for residue D 38 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 39 # IMPORTANT NOTE! Not complete main chain atoms for residue S 40 # IMPORTANT NOTE! Not complete main chain atoms for residue W 41 # IMPORTANT NOTE! Not complete main chain atoms for residue L 42 # IMPORTANT NOTE! Not complete main chain atoms for residue P 43 # IMPORTANT NOTE! Not complete main chain atoms for residue L 44 # IMPORTANT NOTE! Not complete main chain atoms for residue L 45 # IMPORTANT NOTE! Not complete main chain atoms for residue Y 46 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 47 # IMPORTANT NOTE! Not complete main chain atoms for residue F 48 # IMPORTANT NOTE! Not complete main chain atoms for residue S 49 # IMPORTANT NOTE! Not complete main chain atoms for residue N 50 # IMPORTANT NOTE! Not complete main chain atoms for residue D 51 # IMPORTANT NOTE! Not complete main chain atoms for residue N 52 # IMPORTANT NOTE! Not complete main chain atoms for residue H 53 # IMPORTANT NOTE! Not complete main chain atoms for residue A 54 # IMPORTANT NOTE! Not complete main chain atoms for residue Y 55 # IMPORTANT NOTE! Not complete main chain atoms for residue P 56 # IMPORTANT NOTE! Not complete main chain atoms for residue T 57 # IMPORTANT NOTE! Not complete main chain atoms for residue G 58 # IMPORTANT NOTE! Not complete main chain atoms for residue L 59 # IMPORTANT NOTE! Not complete main chain atoms for residue V 60 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 61 # IMPORTANT NOTE! Not complete main chain atoms for residue P 62 # IMPORTANT NOTE! Not complete main chain atoms for residue V 63 # IMPORTANT NOTE! Not complete main chain atoms for residue T 64 # IMPORTANT NOTE! Not complete main chain atoms for residue E 65 # IMPORTANT NOTE! Not complete main chain atoms for residue L 66 # IMPORTANT NOTE! Not complete main chain atoms for residue Y 67 # IMPORTANT NOTE! Not complete main chain atoms for residue E 68 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 69 # IMPORTANT NOTE! Not complete main chain atoms for residue I 70 # IMPORTANT NOTE! Not complete main chain atoms for residue S 71 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 72 # IMPORTANT NOTE! Not complete main chain atoms for residue T 73 # IMPORTANT NOTE! Not complete main chain atoms for residue L 74 # IMPORTANT NOTE! Not complete main chain atoms for residue S 75 # IMPORTANT NOTE! Not complete main chain atoms for residue D 76 # IMPORTANT NOTE! Not complete main chain atoms for residue V 77 # IMPORTANT NOTE! Not complete main chain atoms for residue E 78 # IMPORTANT NOTE! Not complete main chain atoms for residue G 79 # IMPORTANT NOTE! Not complete main chain atoms for residue F 80 # IMPORTANT NOTE! Not complete main chain atoms for residue T 81 # IMPORTANT NOTE! Not complete main chain atoms for residue F 82 # IMPORTANT NOTE! Not complete main chain atoms for residue E 83 # IMPORTANT NOTE! Not complete main chain atoms for residue L 84 # IMPORTANT NOTE! Not complete main chain atoms for residue G 85 # IMPORTANT NOTE! Not complete main chain atoms for residue L 86 # IMPORTANT NOTE! Not complete main chain atoms for residue T 87 # IMPORTANT NOTE! Not complete main chain atoms for residue E 88 # IMPORTANT NOTE! Not complete main chain atoms for residue D 89 # IMPORTANT NOTE! Not complete main chain atoms for residue E 90 # IMPORTANT NOTE! Not complete main chain atoms for residue N 91 # IMPORTANT NOTE! Not complete main chain atoms for residue V 92 # IMPORTANT NOTE! Not complete main chain atoms for residue F 93 # IMPORTANT NOTE! Not complete main chain atoms for residue T 94 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 95 # IMPORTANT NOTE! Not complete main chain atoms for residue A 96 # IMPORTANT NOTE! Not complete main chain atoms for residue D 97 # IMPORTANT NOTE! Not complete main chain atoms for residue S 98 # IMPORTANT NOTE! Not complete main chain atoms for residue L 99 # IMPORTANT NOTE! Not complete main chain atoms for residue S 100 # IMPORTANT NOTE! Not complete main chain atoms for residue D 101 # IMPORTANT NOTE! Not complete main chain atoms for residue W 102 # IMPORTANT NOTE! Not complete main chain atoms for residue A 103 # IMPORTANT NOTE! Not complete main chain atoms for residue N 104 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 105 # IMPORTANT NOTE! Not complete main chain atoms for residue F 106 # IMPORTANT NOTE! Not complete main chain atoms for residue L 107 # IMPORTANT NOTE! Not complete main chain atoms for residue L 108 # IMPORTANT NOTE! Not complete main chain atoms for residue G 109 # IMPORTANT NOTE! Not complete main chain atoms for residue I 110 # IMPORTANT NOTE! Not complete main chain atoms for residue G 111 # IMPORTANT NOTE! Not complete main chain atoms for residue L 112 # IMPORTANT NOTE! Not complete main chain atoms for residue A 113 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 114 # IMPORTANT NOTE! Not complete main chain atoms for residue P 115 # IMPORTANT NOTE! Not complete main chain atoms for residue E 116 # IMPORTANT NOTE! Not complete main chain atoms for residue L 117 # IMPORTANT NOTE! Not complete main chain atoms for residue A 118 # IMPORTANT NOTE! Not complete main chain atoms for residue K 119 # IMPORTANT NOTE! Not complete main chain atoms for residue E 120 # IMPORTANT NOTE! Not complete main chain atoms for residue K 121 # IMPORTANT NOTE! Not complete main chain atoms for residue G 122 # IMPORTANT NOTE! Not complete main chain atoms for residue E 123 # IMPORTANT NOTE! Not complete main chain atoms for residue I 124 # IMPORTANT NOTE! Not complete main chain atoms for residue G 125 # IMPORTANT NOTE! Not complete main chain atoms for residue E 126 # IMPORTANT NOTE! Not complete main chain atoms for residue A 127 # IMPORTANT NOTE! Not complete main chain atoms for residue V 128 # IMPORTANT NOTE! Not complete main chain atoms for residue D 129 # IMPORTANT NOTE! Not complete main chain atoms for residue D 130 # IMPORTANT NOTE! Not complete main chain atoms for residue L 131 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 132 # IMPORTANT NOTE! Not complete main chain atoms for residue D 133 # IMPORTANT NOTE! Not complete main chain atoms for residue I 134 # IMPORTANT NOTE! Not complete main chain atoms for residue C 135 # IMPORTANT NOTE! Not complete main chain atoms for residue Q 136 # IMPORTANT NOTE! Not complete main chain atoms for residue L 137 # IMPORTANT NOTE! Not complete main chain atoms for residue G 138 # IMPORTANT NOTE! Not complete main chain atoms for residue Y 139 # IMPORTANT NOTE! Not complete main chain atoms for residue D 140 # IMPORTANT NOTE! Not complete main chain atoms for residue E 141 # IMPORTANT NOTE! Not complete main chain atoms for residue D 142 # IMPORTANT NOTE! Not complete main chain atoms for residue D 143 # IMPORTANT NOTE! Not complete main chain atoms for residue N 144 # IMPORTANT NOTE! Not complete main chain atoms for residue E 145 # IMPORTANT NOTE! Not complete main chain atoms for residue E 146 # IMPORTANT NOTE! Not complete main chain atoms for residue E 147 # IMPORTANT NOTE! Not complete main chain atoms for residue L 148 # IMPORTANT NOTE! Not complete main chain atoms for residue A 149 # IMPORTANT NOTE! Not complete main chain atoms for residue E 150 # IMPORTANT NOTE! Not complete main chain atoms for residue A 151 # IMPORTANT NOTE! Not complete main chain atoms for residue L 152 # IMPORTANT NOTE! Not complete main chain atoms for residue E 153 # IMPORTANT NOTE! Not complete main chain atoms for residue E 154 # IMPORTANT NOTE! Not complete main chain atoms for residue I 155 # IMPORTANT NOTE! Not complete main chain atoms for residue I 156 # IMPORTANT NOTE! Not complete main chain atoms for residue E 157 # IMPORTANT NOTE! Not complete main chain atoms for residue V 159 # IMPORTANT NOTE! Not complete main chain atoms for residue R 160 # IMPORTANT NOTE! Not complete main chain atoms for residue T 161 # IMPORTANT NOTE! Not complete main chain atoms for residue I 162 # IMPORTANT NOTE! Not complete main chain atoms for residue A 163 # IMPORTANT NOTE! Not complete main chain atoms for residue M 164 # IMPORTANT NOTE! Not complete main chain atoms for residue L 165 # IMPORTANT NOTE! Not complete main chain atoms for residue F 166 # IMPORTANT NOTE! Not complete main chain atoms for residue Y 167 # IMPORTANT NOTE! Not complete main chain atoms for residue S 168 # IMPORTANT NOTE! Not complete main chain atoms for residue H 169 # IMPORTANT NOTE! Not complete main chain atoms for residue F 170 # Checking the TS prediction MODEL 5 (DONE) # MODEL index: 5 # Target name: T0129 # Total number of residues in target: 182 # Total number of residues in model: 168 # Total number of atoms in model: 168 # Number of atoms with 1.0 occupancy: 168 # Number of fragments in model: 1 # Number of METHOD records: 1 # No errors. # Number of Warnings: 168 ################################ # # # SUBMISSION # # # ################################ # # # BEGIN # # # ################################ PFRMAT TS TARGET T0129 AUTHOR 6269-7633-6117 METHOD CAFASP MODEL 5 PARENT 1FNC ATOM 55 CA MET 1 18.543 -10.607 9.849 1.00 1.00 ATOM 56 CA LEU 2 21.904 -10.397 11.537 1.00 1.00 ATOM 57 CA ILE 3 23.521 -7.713 13.614 1.00 1.00 ATOM 58 CA SER 4 27.205 -7.756 14.385 1.00 1.00 ATOM 59 CA HIS 5 29.311 -5.858 16.874 1.00 1.00 ATOM 60 CA SER 6 32.816 -5.407 15.631 1.00 1.00 ATOM 61 CA ASP 7 35.867 -3.618 17.050 1.00 1.00 ATOM 62 CA LEU 8 38.759 -2.116 15.191 1.00 1.00 ATOM 63 CA ASN 9 42.202 -0.863 16.273 1.00 1.00 ATOM 64 CA GLN 10 43.012 2.777 15.442 1.00 1.00 ATOM 65 CA GLN 11 45.803 3.125 17.890 1.00 1.00 ATOM 108 CA LEU 12 41.100 4.987 23.755 1.00 1.00 ATOM 109 CA LYS 13 42.758 2.939 20.987 1.00 1.00 ATOM 110 CA SER 14 39.781 1.065 19.576 1.00 1.00 ATOM 111 CA ALA 15 36.384 1.845 17.831 1.00 1.00 ATOM 112 CA GLY 16 33.258 -0.365 17.692 1.00 1.00 ATOM 113 CA ILE 17 30.430 -0.524 15.118 1.00 1.00 ATOM 114 CA GLY 18 27.028 -2.080 15.230 1.00 1.00 ATOM 115 CA PHE 19 26.123 -3.234 11.818 1.00 1.00 ATOM 116 CA ASN 20 23.117 -4.926 10.265 1.00 1.00 ATOM 117 CA ALA 21 23.890 -7.302 7.316 1.00 1.00 ATOM 118 CA THR 22 21.856 -5.949 4.441 1.00 1.00 ATOM 119 CA GLU 23 20.217 -8.526 2.161 1.00 1.00 ATOM 128 CA LEU 24 21.427 -8.844 -3.500 1.00 1.00 ATOM 129 CA HIS 25 23.864 -8.299 -0.640 1.00 1.00 ATOM 130 CA GLY 26 24.564 -4.753 0.540 1.00 1.00 ATOM 131 CA PHE 27 28.202 -3.859 -0.309 1.00 1.00 ATOM 132 CA LEU 28 29.574 -2.351 2.876 1.00 1.00 ATOM 133 CA SER 29 27.373 -4.199 5.273 1.00 1.00 ATOM 134 CA GLY 30 28.400 -7.656 4.067 1.00 1.00 ATOM 135 CA LEU 31 32.048 -6.647 3.713 1.00 1.00 ATOM 136 CA LEU 32 31.966 -5.529 7.352 1.00 1.00 ATOM 137 CA CYS 33 29.926 -8.495 8.731 1.00 1.00 ATOM 138 CA GLY 34 32.313 -10.911 7.082 1.00 1.00 ATOM 139 CA LEU 36 35.487 -9.355 8.583 1.00 1.00 ATOM 140 CA LYS 37 37.915 -11.659 10.404 1.00 1.00 ATOM 141 CA ASP 38 40.302 -10.541 13.233 1.00 1.00 ATOM 142 CA GLN 39 43.379 -9.308 11.469 1.00 1.00 ATOM 143 CA SER 40 41.694 -7.960 8.476 1.00 1.00 ATOM 144 CA TRP 41 42.345 -4.363 7.497 1.00 1.00 ATOM 145 CA LEU 42 39.772 -1.700 7.021 1.00 1.00 ATOM 146 CA PRO 43 39.737 1.830 5.665 1.00 1.00 ATOM 147 CA LEU 44 38.119 4.459 7.781 1.00 1.00 ATOM 148 CA LEU 45 37.498 8.214 7.562 1.00 1.00 ATOM 149 CA TYR 46 36.222 10.860 9.843 1.00 1.00 ATOM 154 CA GLN 47 24.344 16.636 15.650 1.00 1.00 ATOM 155 CA PHE 48 24.452 13.747 18.093 1.00 1.00 ATOM 156 CA SER 49 26.939 15.076 20.569 1.00 1.00 ATOM 157 CA ASN 50 26.009 14.923 24.260 1.00 1.00 ATOM 158 CA ASP 51 24.828 17.909 26.161 1.00 1.00 ATOM 159 CA ASN 52 27.321 19.704 28.360 1.00 1.00 ATOM 160 CA HIS 53 24.849 19.595 31.338 1.00 1.00 ATOM 162 CA ALA 54 22.412 16.967 35.240 1.00 1.00 ATOM 163 CA TYR 55 20.316 16.868 32.004 1.00 1.00 ATOM 164 CA PRO 56 17.351 14.641 31.336 1.00 1.00 ATOM 165 CA THR 57 18.288 12.767 28.189 1.00 1.00 ATOM 166 CA GLY 58 15.734 10.778 26.284 1.00 1.00 ATOM 167 CA LEU 59 17.089 8.328 23.745 1.00 1.00 ATOM 168 CA VAL 60 14.845 6.928 21.023 1.00 1.00 ATOM 169 CA GLN 61 16.503 4.247 18.914 1.00 1.00 ATOM 170 CA PRO 62 15.451 1.553 16.441 1.00 1.00 ATOM 174 CA VAL 63 21.060 2.047 19.503 1.00 1.00 ATOM 175 CA THR 64 24.775 2.691 18.544 1.00 1.00 ATOM 176 CA GLU 65 25.295 6.297 19.684 1.00 1.00 ATOM 177 CA LEU 66 23.266 5.625 22.797 1.00 1.00 ATOM 178 CA TYR 67 25.511 2.827 23.692 1.00 1.00 ATOM 179 CA GLU 68 28.276 5.340 23.284 1.00 1.00 ATOM 180 CA GLN 69 26.693 7.831 25.601 1.00 1.00 ATOM 181 CA ILE 70 25.751 5.290 28.246 1.00 1.00 ATOM 182 CA SER 71 29.195 3.671 28.485 1.00 1.00 ATOM 183 CA GLN 72 30.575 7.109 29.253 1.00 1.00 ATOM 184 CA THR 73 27.803 7.923 31.700 1.00 1.00 ATOM 185 CA LEU 74 27.642 4.714 33.654 1.00 1.00 ATOM 192 CA SER 75 32.296 14.571 34.125 1.00 1.00 ATOM 193 CA ASP 76 29.858 12.970 36.401 1.00 1.00 ATOM 194 CA VAL 77 26.351 12.262 35.171 1.00 1.00 ATOM 195 CA GLU 78 23.563 12.854 37.637 1.00 1.00 ATOM 196 CA GLY 79 20.519 13.443 35.464 1.00 1.00 ATOM 197 CA PHE 80 17.925 11.045 34.240 1.00 1.00 ATOM 198 CA THR 81 18.663 8.947 31.109 1.00 1.00 ATOM 199 CA PHE 82 15.739 7.180 29.583 1.00 1.00 ATOM 200 CA GLU 83 16.245 4.833 26.758 1.00 1.00 ATOM 201 CA LEU 84 13.540 3.381 24.446 1.00 1.00 ATOM 202 CA GLY 85 14.699 0.751 22.064 1.00 1.00 ATOM 203 CA LEU 86 12.648 -0.711 19.196 1.00 1.00 ATOM 204 CA THR 87 13.749 -4.173 17.895 1.00 1.00 ATOM 205 CA GLU 88 11.738 -7.073 16.234 1.00 1.00 ATOM 206 CA ASP 89 12.412 -9.955 18.573 1.00 1.00 ATOM 207 CA GLU 90 13.769 -10.941 21.900 1.00 1.00 ATOM 208 CA ASN 91 16.667 -12.464 20.144 1.00 1.00 ATOM 209 CA VAL 92 17.353 -8.946 18.721 1.00 1.00 ATOM 210 CA PHE 93 17.554 -7.051 22.061 1.00 1.00 ATOM 211 CA THR 94 20.972 -5.435 21.289 1.00 1.00 ATOM 212 CA GLN 95 23.309 -4.903 24.322 1.00 1.00 ATOM 213 CA ALA 96 20.534 -5.760 26.767 1.00 1.00 ATOM 214 CA ASP 97 22.948 -7.395 29.200 1.00 1.00 ATOM 215 CA SER 98 25.000 -4.193 29.335 1.00 1.00 ATOM 216 CA LEU 99 21.924 -2.038 29.890 1.00 1.00 ATOM 217 CA SER 100 20.690 -4.345 32.679 1.00 1.00 ATOM 218 CA ASP 101 24.073 -3.838 34.481 1.00 1.00 ATOM 219 CA TRP 102 23.763 -0.064 34.153 1.00 1.00 ATOM 220 CA ALA 103 20.257 -0.138 35.535 1.00 1.00 ATOM 221 CA ASN 104 21.481 -1.992 38.562 1.00 1.00 ATOM 228 CA GLN 105 15.133 4.114 32.809 1.00 1.00 ATOM 229 CA PHE 106 14.879 1.475 30.137 1.00 1.00 ATOM 230 CA LEU 107 11.951 0.431 27.841 1.00 1.00 ATOM 231 CA LEU 108 11.888 -2.059 25.006 1.00 1.00 ATOM 232 CA GLY 109 9.414 -2.216 22.192 1.00 1.00 ATOM 233 CA ILE 110 9.622 -5.821 20.749 1.00 1.00 ATOM 234 CA GLY 111 7.551 -5.358 17.659 1.00 1.00 ATOM 235 CA LEU 112 6.859 -8.941 16.711 1.00 1.00 ATOM 236 CA ALA 113 6.261 -10.244 20.077 1.00 1.00 ATOM 237 CA GLN 114 4.439 -7.524 21.823 1.00 1.00 ATOM 238 CA PRO 115 1.089 -5.851 21.200 1.00 1.00 ATOM 239 CA GLU 116 -0.724 -3.199 23.013 1.00 1.00 ATOM 240 CA LEU 117 -4.243 -3.651 24.498 1.00 1.00 ATOM 241 CA ALA 118 -5.829 -3.073 21.089 1.00 1.00 ATOM 242 CA LYS 119 -3.514 -5.837 19.968 1.00 1.00 ATOM 243 CA GLU 120 -1.384 -3.315 17.991 1.00 1.00 ATOM 244 CA LYS 121 2.264 -3.926 17.069 1.00 1.00 ATOM 245 CA GLY 122 4.721 -2.657 19.707 1.00 1.00 ATOM 246 CA GLU 123 6.645 0.023 17.902 1.00 1.00 ATOM 247 CA ILE 124 8.696 2.459 19.812 1.00 1.00 ATOM 248 CA GLY 125 6.009 5.155 19.427 1.00 1.00 ATOM 249 CA GLU 126 3.582 2.582 20.660 1.00 1.00 ATOM 250 CA ALA 127 5.538 2.093 23.740 1.00 1.00 ATOM 251 CA VAL 128 6.016 5.911 24.119 1.00 1.00 ATOM 252 CA ASP 129 2.308 6.566 24.329 1.00 1.00 ATOM 253 CA ASP 130 2.042 4.465 27.290 1.00 1.00 ATOM 254 CA LEU 131 4.137 7.231 28.979 1.00 1.00 ATOM 255 CA GLN 132 2.617 10.188 27.267 1.00 1.00 ATOM 256 CA ASP 133 1.807 12.361 30.128 1.00 1.00 ATOM 257 CA ILE 134 5.190 11.911 31.653 1.00 1.00 ATOM 258 CA CYS 135 7.195 12.463 28.524 1.00 1.00 ATOM 259 CA GLN 136 5.138 15.444 27.574 1.00 1.00 ATOM 260 CA LEU 137 5.889 16.987 30.886 1.00 1.00 ATOM 261 CA GLY 138 9.583 16.309 30.527 1.00 1.00 ATOM 262 CA TYR 139 9.552 18.018 27.149 1.00 1.00 ATOM 263 CA ASP 140 8.448 21.238 28.778 1.00 1.00 ATOM 264 CA GLU 141 11.641 21.661 30.687 1.00 1.00 ATOM 265 CA ASP 142 14.689 23.497 29.506 1.00 1.00 ATOM 266 CA ASP 143 17.150 20.730 30.753 1.00 1.00 ATOM 267 CA ASN 144 15.524 17.969 28.713 1.00 1.00 ATOM 278 CA GLU 145 10.476 9.848 12.790 1.00 1.00 ATOM 279 CA GLU 146 6.923 9.984 11.370 1.00 1.00 ATOM 280 CA GLU 147 5.393 7.641 13.852 1.00 1.00 ATOM 281 CA LEU 148 6.716 9.728 16.658 1.00 1.00 ATOM 282 CA ALA 149 5.459 12.904 15.124 1.00 1.00 ATOM 283 CA GLU 150 2.024 11.150 14.831 1.00 1.00 ATOM 284 CA ALA 151 1.931 10.629 18.602 1.00 1.00 ATOM 285 CA LEU 152 3.295 14.083 19.366 1.00 1.00 ATOM 286 CA GLU 153 0.892 16.076 17.208 1.00 1.00 ATOM 287 CA GLU 154 -1.967 14.745 19.258 1.00 1.00 ATOM 288 CA ILE 155 -0.282 15.113 22.599 1.00 1.00 ATOM 289 CA ILE 156 0.457 18.706 22.050 1.00 1.00 ATOM 290 CA GLU 157 -2.824 19.629 20.422 1.00 1.00 ATOM 303 CA VAL 159 13.143 22.497 20.366 1.00 1.00 ATOM 304 CA ARG 160 15.414 21.915 17.331 1.00 1.00 ATOM 305 CA THR 161 16.655 25.483 17.572 1.00 1.00 ATOM 306 CA ILE 162 17.300 25.193 21.340 1.00 1.00 ATOM 307 CA ALA 163 19.289 22.064 20.599 1.00 1.00 ATOM 308 CA MET 164 16.871 19.925 22.442 1.00 1.00 ATOM 309 CA LEU 165 15.596 17.736 19.720 1.00 1.00 ATOM 310 CA PHE 166 18.364 15.906 17.885 1.00 1.00 ATOM 311 CA TYR 167 18.032 13.540 14.967 1.00 1.00 ATOM 312 CA SER 168 19.976 11.065 12.937 1.00 1.00 ATOM 313 CA HIS 169 17.773 8.711 10.908 1.00 1.00 ATOM 314 CA PHE 170 18.703 6.708 7.797 1.00 1.00 TER END ################################ # # # END # # # ################################ From mailer@bialko.llnl.gov Sat Jun 15 06:34:28 2002 Date: Sat, 15 Jun 2002 06:34:23 -0700 (PDT) From: Automatic Reply To: karplus@soe.ucsc.edu X-SpamBouncer: 1.4 (10/07/01) X-SBPass: NoBounce X-SBClass: OK # # Protein Structure Prediction Center, LLNL, Livermore, CA # Verification system Sat Jun 15 06:07:57 PDT 2002 by Adam Zemla # # The PIN number of your submission is: PIN_191292_10749 # (PIN number is not an ACCESSION CODE) # Thank you for your submission. Your prediction has been accepted with an ACCESSION CODE: T0129SS007_1 Current information on models submitted in prediction T0129SS007 MODEL_INDEX PIN CODE DATE E-mail T0129SS007_1 PIN_191292_10749 6269-7633-6117 06/15/02 06:07:57 casp5@bialko.llnl.gov PLEASE NOTE: Submission of a duplicate prediction (same target, format, model index) will REPLACE an existing submission (ACCESSION CODE), provided it is received before the target has expired. The current status of models accepted for target T0129 MODEL_INDEX PIN CODE DATE E-mail T0129TS007_1 PIN_466196_10280 6269-7633-6117 06/04/02 11:35:30 casp5@bialko.llnl.gov T0129TS007_2 PIN_472287_10281 6269-7633-6117 06/04/02 11:35:44 casp5@bialko.llnl.gov T0129TS007_3 PIN_497859_10287 6269-7633-6117 06/04/02 11:38:01 casp5@bialko.llnl.gov T0129TS007_4 PIN_468359_10282 6269-7633-6117 06/04/02 11:35:59 casp5@bialko.llnl.gov T0129TS007_5 PIN_503713_10288 6269-7633-6117 06/04/02 11:38:16 casp5@bialko.llnl.gov T0129SS007_1 PIN_191292_10749 6269-7633-6117 06/15/02 06:07:57 casp5@bialko.llnl.gov For more information on accepted models submitted to CASP5 see: http://PredictionCenter.llnl.gov/casp5/models/casp5-models.html Please check below if the verified data of your submission is correct. # Reading prediction format SS PFRMAT SS TARGET T0129 AUTHOR 6269-7633-6117 # Reading MODEL 1 # Reading prediction format SS (DONE) # Checking the SS prediction MODEL 1 # Checking the SS prediction MODEL 1 (DONE) # MODEL index: 1 # Total number of residues in model: 182 # Number of residues with nonzero confidence: 182 # Number of METHOD records: 42 # No errors. ################################ # # # SUBMISSION # # # ################################ # # # BEGIN # # # ################################ PFRMAT SS TARGET T0129 AUTHOR 6269-7633-6117 METHOD CAFASP METHOD samt99 METHOD This prediction was derived from the following methods METHOD by averaging the corresponding probabilities: METHOD Method 0: METHOD TARGET seed-seqs-6232.a2m(1) METHOD Using neural net overrep-2500-IDaa13-5-9-7-10-5-9-11-ehl2-seeded2-stride-trained.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 9 METHOD 7 10 METHOD 5 9 METHOD 11 3 (1 EHL2 ) METHOD The input amino acid frequencies were determined from METHOD alignment /var/tmp/hmm-target99-work-16458//target-align-16458.a2m METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10) METHOD The weighting was determined by the posterior distribution METHOD after regularizing with /projects/compbio/lib/recode3.20comp. METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 4.99852 METHOD METHOD CHAIN 1 METHOD Method 1: METHOD Prediction using SAM HMM nearest-neighbor METHOD sequence: seed-seqs-6232.a2m(1) METHOD model_file: /projects/compbio/tmp/sam-nn-tmp.cc58.22802/model.mod METHOD database_files: /projects/compbio/programs/hmm-server-2.0/src/pcc/data/overrep-2260.verify.mixed.seq /projects/compbio/programs/hmm-server-2.0/src/pcc/data/overrep-2260.verify.mixed.2d METHOD scoring_mode: local METHOD null_model: reverse METHOD scoring_algorithm: EM METHOD adjust_score: 2 METHOD date: Tue May 28 21:06:21 2002 METHOD Method 2: METHOD ###begin 0 METHOD METHOD Protein secondary structure prediction by universal HMM METHOD HMM file: /projects/compbio/programs/hmm-server-2.0/src/pcc/scripts/gdac.test.initreest.38state.abb.isites.gd.updated.ghmm-128reest-1-128-105-0.07gd METHOD Alignment file: /var/tmp/hmm-target99-work-16458//target-align-16458.a2m METHOD METHOD guide seq name: seed-seqs-6232.a2m(1), 182 bases, 8C6AAF0E checksum. METHOD ###end 0 MODEL 1 M C 0.638 L C 0.647 I C 0.623 S C 0.562 H H 0.605 S H 0.684 D H 0.722 L H 0.747 N H 0.76 Q H 0.786 Q H 0.777 L H 0.768 K H 0.749 S H 0.736 A H 0.607 G H 0.473 I C 0.499 G C 0.631 F C 0.596 N C 0.674 A H 0.583 T H 0.667 E H 0.663 L H 0.621 H H 0.502 G H 0.457 F H 0.451 L H 0.417 S H 0.368 G C 0.425 L C 0.395 L C 0.39 C C 0.514 G C 0.638 G C 0.693 L C 0.685 K C 0.679 D H 0.506 Q H 0.61 S H 0.629 W H 0.654 L H 0.672 P H 0.688 L H 0.69 L H 0.692 Y H 0.676 Q H 0.655 F H 0.604 S H 0.487 N C 0.579 D C 0.595 N C 0.617 H C 0.567 A C 0.538 Y C 0.542 P C 0.555 T H 0.443 G H 0.489 L H 0.502 V H 0.483 Q H 0.468 P H 0.54 V H 0.763 T H 0.788 E H 0.796 L H 0.79 Y H 0.79 E H 0.792 Q H 0.774 I H 0.752 S H 0.732 Q H 0.718 T H 0.66 L H 0.64 S H 0.541 D H 0.447 V C 0.446 E C 0.568 G C 0.566 F C 0.484 T E 0.461 F E 0.592 E E 0.604 L E 0.601 G E 0.551 L C 0.482 T C 0.69 E C 0.704 D C 0.718 E C 0.628 N C 0.543 V H 0.535 F H 0.549 T H 0.594 Q H 0.702 A H 0.735 D H 0.755 S H 0.761 L H 0.762 S H 0.747 D H 0.752 W H 0.745 A H 0.749 N H 0.73 Q H 0.737 F H 0.716 L H 0.694 L H 0.61 G H 0.542 I H 0.473 G C 0.503 L C 0.52 A C 0.566 Q C 0.536 P C 0.469 E H 0.482 L H 0.465 A H 0.49 K H 0.498 E H 0.488 K H 0.482 G H 0.529 E H 0.607 I H 0.75 G H 0.776 E H 0.797 A H 0.8 V H 0.82 D H 0.818 D H 0.815 L H 0.842 Q H 0.819 D H 0.794 I H 0.763 C H 0.741 Q H 0.701 L H 0.566 G C 0.6 Y C 0.631 D C 0.657 E C 0.487 D C 0.518 D C 0.483 N C 0.579 E H 0.747 E H 0.772 E H 0.777 L H 0.775 A H 0.793 E H 0.787 A H 0.781 L H 0.838 E H 0.849 E H 0.852 I H 0.837 I H 0.828 E H 0.827 Y H 0.813 V H 0.786 R H 0.755 T H 0.717 I H 0.7 A H 0.7 M H 0.694 L H 0.681 F H 0.662 Y H 0.643 S H 0.603 H H 0.544 F H 0.436 N C 0.609 E C 0.695 G C 0.701 E C 0.718 I C 0.704 E C 0.705 S C 0.707 K C 0.735 P C 0.639 V C 0.472 L C 0.486 H C 0.679 END ################################ # # # END # # # ################################