#!/usr/local/bin/perl
#Usage: create_summary_html label base_url > summary.html
#Create a SAM_T02 summary html page
if ($#ARGV < 1) { &print_usage_exit; }
($label, $base_url) = @ARGV;
print "\n\n";
print "SAM_T02 Results for $label\n";
print "\n";
print "\n\n";
print "SAM_T02 Results for $label
\n";
print "
\n";
print "\n";
print "When SAM_T02 finishes, you will see links to the following files below:\n";
print "\n";
print "- Inputs\n";
print "
\n";
print " - your submitted sequence in a2m format\n";
print "
- SAM_T02 multiple alignment in a2m format\n";
print "
- SAM_T02 multiple alignment in pretty html format\n";
print "
- SAM_T02 hidden Markov model\n";
print "
\n";
print " - Secondary Structure Prediction\n";
print "
\n";
print " - DSSP secondary structure predictions\n";
print "
- STRIDE secondary structure predictions\n";
print "
\n";
print " - Sequence Logos\n";
print "
\n";
print " - SAM_T02 multiple alignment\n";
print "
- DSSP secondary structure prediction\n";
print "
- STRIDE secondary structure prediction\n";
print "
\n";
print " - Target model scores with annotation\n";
print "
\n";
print " - DSSP two-track target model scores of T2K template library\n";
print "
- STRIDE two-track target model scores of T2K template library\n";
print "
- single-track target model scores of PDB\n";
print "
\n";
print " - Annotated Template model scores\n";
print "
- Top Hits -- best scoring templates from all models\n";
print "
- Alignments for Top Hits\n";
print "
\n";
print " - best several alignments\n";
print "
- top alignments in CASP AL format\n";
print "
\n";
print "
\n";
print "
\n";
sub print_usage_exit {
print " Usage: create_summary_html