;  SAM: prettyalign v3.2 (July 31, 2000) compiled 07/31/00_16:52:38
;  (c) 1992-1999 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1999.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
                                          10        20        30      
                                           |         |         |      
T0098 ............................----------------------------DNKPKNLD
1nseA srapapatphapdhspapnsptltrppeGPKFPRVKNWELGSITYDTLCAQSQQDGPCTPRRCL


        40        50        60        70        80        90       100
         |         |         |         |         |         |         |
T0098 ASIT-------------------------------SIIHEIGVPAHIKGYLYLREAIA------
1nseA GSLVLPRKLQTRPSPGPPPAEQLLSQARDFINQYYSSIKRSGSQAHEERLQEVEAEVASTGTYH


             110       120       130       140       150       160    
               |         |         |         |         |         |    
T0098 ------------MVYHDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNLESIS
1nseA LRESELVFGAKQAWRNAPRCVGRIQWGKLQVFDARDCSSAQEMFTYICNHIKYATNRGNLRSAI


         170       180       190       200       210       220       2
           |         |         |         |         |         |        
T0098 SLFG------------------------------------------------------------
1nseA TVFPQRAPGRGDFRIWNSQLVRYAGYRQQDGSVRGDPANVEITELCIQHGWTPGNGRFDVLPLL


      30       240       250       260       270       280       290  
       |         |         |         |         |         |         |  
T0098 ----------------------------------------------------------------
1nseA LQAPDEAPELFVLPPELVLEVPLEHPTLEWFAALGLRWYALPAVSNMLLEIGGLEFSAAPFSGW


           300       310       320       330       340       350      
             |         |         |         |         |         |      
T0098 ----------------------------------------------------------------
1nseA YMSTEIGTRNLCDPHRYNILEDVAVCMDLDTRTTSSLWKDKAAVEINLAVLHSFQLAKVTIVDH


       360       370       380       390       400       410      
         |         |         |         |         |         |      
T0098 YTVSVSKAKPTNSEFIA------------------------------MVADKLRLEHKAS
1nseA HAATVSFMKHLDNEQKARGGCPADWAWIVPPISGSLTPVFHQEMVNYILSPAFRYQPDPW