;  SAM: prettyalign v3.2 (June, 2000) compiled 07/10/00_09:40:44
;  (c) 1992-1999 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1999.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
                                                                 10    
                                                                 |    
----mvkdtlfstpiaklgdfifdenvaevfpdmiqrsvpgysniitaigmlaerfvtad----------
VDSV........................................................YRTRSLGVAA


     20        30        40        50        60        70            80
     |         |         |         |         |         |             |
-------------------------------------------SNVYDLGCSRGAATLSARRNinqpNVK
EGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE....GFS


         90       100       110       120       130       140         1
         |         |         |         |         |         |          
IIGIDNSQPMVERCRQHIAAYHS---EIPVEILCND----IRHVEIKN-ASMVILN--FTLQFLpp----
VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLP..DSKG


 50       160       170       180       190       200       210       2
 |         |         |         |         |         |         |        
--EDRIALLTKIYEGLNPNGVLVLSEKFR----------------------------------FEDT---
DQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTL


 20       230       240       250       260       270       280       2
 |         |         |         |         |         |         |        
------------------------------KINHLLIDLH-----HQFKRANGYSELEVSQKR-------
DYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVL


 90                                               
 |                                               
-----talenvmrtdsiethkvrlknvgfsqvelwfqcfnfgsmiavk.
KKTG-............................................