#! /bin/csh -f
../al2fasta \
    -output t0089.1hpm.patched.al2fasta.a2m \
    -template 1hpm \
    -checktarget /projects/compbio/experiments/casp4/t89/T0089.seq \
    < t0089.1hpm.model1.noofs.patched.al
prettyalign t0089.1hpm.patched.al2fasta.a2m \
    > t0089.1hpm.patched.al2fasta.a2m.pa
