;  SAM: prettyalign v3.2 (July 31, 2000) compiled 08/11/00_16:27:51
;  (c) 1992-2000 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1999.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
                                                                 10   
                                                                  |   
T0088 avsfigstendvgpsqgsyssthamdnlpfvyntgynigyqnanvwrisgg-------------
1bh5A aepqppsg...........................................--GLTDEAALSCC


           20        30        40        50        60        70       
            |         |         |         |         |         |       
T0088 --------------------------------------------------FCVGLDGKVDLPVV
1bh5A SDADPSTKDFLLQETMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKE


       80        90       100       110       120       130       140 
        |         |         |         |         |         |         | 
T0088 GSLDGQSIYGLTEEVGLLIWMGDTNYSRGTAMSGNSWENVFSGWCVG-----------------
1bh5A KDEKIAWALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVK


            150       160       170                                   
              |         |         |                                   
T0088 -----------------------------------nyvstqglsvhvrpvilkrnssaqysvqk
1bh5A FVKKPDDGKMKGLAFIQDPDGYWIQILNPNKMATLm............................


                      
                      
T0088 tsigsirmrpyngss.
1bh5A ................